JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
DTWD1_chr15_49616048_49661232	0/0	t0063	12785	1	0	0	1	0	0	copy fasta	DTWD1	chr15	49616048	49661232
DTWD1_chr15_49616048_49661232	0/0	t0064	12787	1	0	0	1	0	0	copy fasta	DTWD1	chr15	49616048	49661232
DTWD1_chr15_49616048_49661232	0/0	t0065	12787	1	0	0	1	0	0	copy fasta	DTWD1	chr15	49616048	49661232
DTWD1_chr15_49616048_49661232	0/0	t0066	12785	1	1	0	0	0	0	copy fasta	DTWD1	chr15	49616048	49661232
DTWD1_chr15_49616048_49661232	0/0	t0067	12782	1	1	0	0	0	0	copy fasta	DTWD1	chr15	49616048	49661232
DTWD1_chr15_49616048_49661232	0/0	t0068	12785	1	1	0	0	0	0	copy fasta	DTWD1	chr15	49616048	49661232
DTWD1_chr15_49616048_49661232	0/0	t0069	12785	1	0	0	1	0	0	copy fasta	DTWD1	chr15	49616048	49661232
DTWD1_chr15_49616048_49661232	0/0	t0070	12785	1	1	0	0	0	0	copy fasta	DTWD1	chr15	49616048	49661232
DTWD1_chr15_49616048_49661232	0/0	t0071	12785	1	1	0	0	0	0	copy fasta	DTWD1	chr15	49616048	49661232
DTWD1_chr15_49616048_49661232	0/0	t0072	12782	1	0	0	0	0	1	copy fasta	DTWD1	chr15	49616048	49661232
DTWD1_chr15_49616048_49661232	0/0	t0073	12782	1	0	0	1	0	0	copy fasta	DTWD1	chr15	49616048	49661232
DTWD1_chr15_49616048_49661232	0/0	t0074	12782	1	1	0	0	0	0	copy fasta	DTWD1	chr15	49616048	49661232
DTWD1_chr15_49616048_49661232	0/0	t0075	12785	1	0	1	0	0	0	copy fasta	DTWD1	chr15	49616048	49661232
DTWD1_chr15_49616048_49661232	0/0	t0076	12782	1	0	0	0	1	0	copy fasta	DTWD1	chr15	49616048	49661232
DTWD2_chr5_118831074_118993547	1/1	t0001	4880	106	20	31	33	8	12	copy fasta	DTWD2	chr5	118831074	118993547
DTWD2_chr5_118831074_118993547	0/0	t0002	4882	20	1	11	2	3	3	copy fasta	DTWD2	chr5	118831074	118993547
DTWD2_chr5_118831074_118993547	0/0	t0003	4884	11	8	3	0	0	0	copy fasta	DTWD2	chr5	118831074	118993547
DTWD2_chr5_118831074_118993547	0/0	t0004	4878	10	9	1	0	0	0	copy fasta	DTWD2	chr5	118831074	118993547
DTWD2_chr5_118831074_118993547	0/0	t0005	4881	9	2	2	0	1	4	copy fasta	DTWD2	chr5	118831074	118993547
DTWD2_chr5_118831074_118993547	0/0	t0006	4880	9	0	5	0	0	4	copy fasta	DTWD2	chr5	118831074	118993547
DTWD2_chr5_118831074_118993547	0/0	t0007	4879	8	8	0	0	0	0	copy fasta	DTWD2	chr5	118831074	118993547
DTWD2_chr5_118831074_118993547	0/0	t0008	4875	6	6	0	0	0	0	copy fasta	DTWD2	chr5	118831074	118993547
DTWD2_chr5_118831074_118993547	0/0	t0009	4880	5	0	1	4	0	0	copy fasta	DTWD2	chr5	118831074	118993547
DTWD2_chr5_118831074_118993547	0/0	t0010	4879	5	0	0	4	0	1	copy fasta	DTWD2	chr5	118831074	118993547
DTWD2_chr5_118831074_118993547	0/0	t0011	4880	5	0	0	5	0	0	copy fasta	DTWD2	chr5	118831074	118993547
DTWD2_chr5_118831074_118993547	0/0	t0012	4880	5	5	0	0	0	0	copy fasta	DTWD2	chr5	118831074	118993547
DTWD2_chr5_118831074_118993547	0/0	t0013	4878	4	4	0	0	0	0	copy fasta	DTWD2	chr5	118831074	118993547
DTWD2_chr5_118831074_118993547	0/0	t0014	4880	4	4	0	0	0	0	copy fasta	DTWD2	chr5	118831074	118993547
DTWD2_chr5_118831074_118993547	0/0	t0015	4878	3	3	0	0	0	0	copy fasta	DTWD2	chr5	118831074	118993547
DTWD2_chr5_118831074_118993547	0/0	t0016	4878	2	2	0	0	0	0	copy fasta	DTWD2	chr5	118831074	118993547
DTWD2_chr5_118831074_118993547	0/0	t0017	4880	2	0	0	0	0	2	copy fasta	DTWD2	chr5	118831074	118993547
DTWD2_chr5_118831074_118993547	0/0	t0018	4879	2	0	2	0	0	0	copy fasta	DTWD2	chr5	118831074	118993547
DTWD2_chr5_118831074_118993547	0/0	t0019	4880	2	0	1	0	0	1	copy fasta	DTWD2	chr5	118831074	118993547
DTWD2_chr5_118831074_118993547	0/0	t0020	4879	2	1	1	0	0	0	copy fasta	DTWD2	chr5	118831074	118993547
DTWD2_chr5_118831074_118993547	0/0	t0021	4878	1	1	0	0	0	0	copy fasta	DTWD2	chr5	118831074	118993547
DTWD2_chr5_118831074_118993547	0/0	t0022	4881	1	0	0	1	0	0	copy fasta	DTWD2	chr5	118831074	118993547
DTWD2_chr5_118831074_118993547	0/0	t0023	4881	1	1	0	0	0	0	copy fasta	DTWD2	chr5	118831074	118993547
DTWD2_chr5_118831074_118993547	0/0	t0024	4878	1	0	1	0	0	0	copy fasta	DTWD2	chr5	118831074	118993547
DTWD2_chr5_118831074_118993547	0/0	t0025	4882	1	0	1	0	0	0	copy fasta	DTWD2	chr5	118831074	118993547
DTWD2_chr5_118831074_118993547	0/0	t0026	4879	1	1	0	0	0	0	copy fasta	DTWD2	chr5	118831074	118993547
DTWD2_chr5_118831074_118993547	0/0	t0027	4881	1	1	0	0	0	0	copy fasta	DTWD2	chr5	118831074	118993547
DTWD2_chr5_118831074_118993547	0/0	t0028	4878	1	1	0	0	0	0	copy fasta	DTWD2	chr5	118831074	118993547
DTWD2_chr5_118831074_118993547	0/0	t0029	4879	1	1	0	0	0	0	copy fasta	DTWD2	chr5	118831074	118993547
DTWD2_chr5_118831074_118993547	0/0	t0030	4879	1	1	0	0	0	0	copy fasta	DTWD2	chr5	118831074	118993547
DTWD2_chr5_118831074_118993547	0/0	t0031	4880	1	0	0	0	0	1	copy fasta	DTWD2	chr5	118831074	118993547
DTWD2_chr5_118831074_118993547	0/0	t0032	4879	1	1	0	0	0	0	copy fasta	DTWD2	chr5	118831074	118993547
DTWD2_chr5_118831074_118993547	0/0	t0033	4880	1	1	0	0	0	0	copy fasta	DTWD2	chr5	118831074	118993547
DTWD2_chr5_118831074_118993547	0/0	t0034	4880	1	1	0	0	0	0	copy fasta	DTWD2	chr5	118831074	118993547
DTWD2_chr5_118831074_118993547	0/0	t0035	4880	1	0	0	0	0	1	copy fasta	DTWD2	chr5	118831074	118993547
DTWD2_chr5_118831074_118993547	0/0	t0036	4880	1	0	1	0	0	0	copy fasta	DTWD2	chr5	118831074	118993547