JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
DTWD2_chr5_118831074_118993547	0/0	t0037	4880	1	1	0	0	0	0	copy fasta	DTWD2	chr5	118831074	118993547
DTWD2_chr5_118831074_118993547	0/0	t0038	4880	1	0	0	1	0	0	copy fasta	DTWD2	chr5	118831074	118993547
DTWD2_chr5_118831074_118993547	0/0	t0039	4880	1	0	1	0	0	0	copy fasta	DTWD2	chr5	118831074	118993547
DTWD2_chr5_118831074_118993547	0/0	t0040	4880	1	0	0	0	0	1	copy fasta	DTWD2	chr5	118831074	118993547
DTWD2_chr5_118831074_118993547	0/0	t0041	4880	1	1	0	0	0	0	copy fasta	DTWD2	chr5	118831074	118993547
DTWD2_chr5_118831074_118993547	0/0	t0042	4880	1	1	0	0	0	0	copy fasta	DTWD2	chr5	118831074	118993547
DTX1_chr12_113051730_113103025	0/1	t0001	2045	128	45	25	31	3	23	copy fasta	DTX1	chr12	113051730	113103025
DTX1_chr12_113051730_113103025	0/0	t0002	2045	124	19	34	50	9	12	copy fasta	DTX1	chr12	113051730	113103025
DTX1_chr12_113051730_113103025	0/0	t0003	2046	23	1	1	17	1	3	copy fasta	DTX1	chr12	113051730	113103025
DTX1_chr12_113051730_113103025	1/0	t0004	2046	19	6	0	9	0	3	copy fasta	DTX1	chr12	113051730	113103025
DTX1_chr12_113051730_113103025	0/0	t0005	2049	10	8	2	0	0	0	copy fasta	DTX1	chr12	113051730	113103025
DTX1_chr12_113051730_113103025	0/0	t0006	2045	4	0	0	4	0	0	copy fasta	DTX1	chr12	113051730	113103025
DTX1_chr12_113051730_113103025	0/0	t0007	2045	3	0	3	0	0	0	copy fasta	DTX1	chr12	113051730	113103025
DTX1_chr12_113051730_113103025	0/0	t0008	2050	3	3	0	0	0	0	copy fasta	DTX1	chr12	113051730	113103025
DTX1_chr12_113051730_113103025	0/0	t0009	2046	2	0	1	0	0	1	copy fasta	DTX1	chr12	113051730	113103025
DTX1_chr12_113051730_113103025	0/0	t0010	2046	2	0	1	1	0	0	copy fasta	DTX1	chr12	113051730	113103025
DTX1_chr12_113051730_113103025	0/0	t0011	2045	2	0	0	0	0	2	copy fasta	DTX1	chr12	113051730	113103025
DTX1_chr12_113051730_113103025	0/0	t0012	2046	2	2	0	0	0	0	copy fasta	DTX1	chr12	113051730	113103025
DTX1_chr12_113051730_113103025	0/0	t0013	2046	2	0	0	2	0	0	copy fasta	DTX1	chr12	113051730	113103025
DTX1_chr12_113051730_113103025	0/0	t0014	2045	1	0	0	0	1	0	copy fasta	DTX1	chr12	113051730	113103025
DTX1_chr12_113051730_113103025	0/0	t0015	2046	1	0	0	1	0	0	copy fasta	DTX1	chr12	113051730	113103025
DTX1_chr12_113051730_113103025	0/0	t0016	2045	1	0	0	0	0	1	copy fasta	DTX1	chr12	113051730	113103025
DTX1_chr12_113051730_113103025	0/0	t0017	2045	1	0	1	0	0	0	copy fasta	DTX1	chr12	113051730	113103025
DTX1_chr12_113051730_113103025	0/0	t0018	2045	1	0	1	0	0	0	copy fasta	DTX1	chr12	113051730	113103025
DTX1_chr12_113051730_113103025	0/0	t0019	2045	1	0	1	0	0	0	copy fasta	DTX1	chr12	113051730	113103025
DTX1_chr12_113051730_113103025	0/0	t0020	2046	1	0	0	1	0	0	copy fasta	DTX1	chr12	113051730	113103025
DTX1_chr12_113051730_113103025	0/0	t0021	2046	1	0	0	0	0	1	copy fasta	DTX1	chr12	113051730	113103025
DTX1_chr12_113051730_113103025	0/0	t0022	2045	1	0	1	0	0	0	copy fasta	DTX1	chr12	113051730	113103025
DTX1_chr12_113051730_113103025	0/0	t0023	2046	1	0	0	1	0	0	copy fasta	DTX1	chr12	113051730	113103025
DTX1_chr12_113051730_113103025	0/0	t0024	2045	1	0	1	0	0	0	copy fasta	DTX1	chr12	113051730	113103025
DTX1_chr12_113051730_113103025	0/0	t0025	2046	1	1	0	0	0	0	copy fasta	DTX1	chr12	113051730	113103025
DTX1_chr12_113051730_113103025	0/0	t0026	2045	1	0	0	1	0	0	copy fasta	DTX1	chr12	113051730	113103025
DTX1_chr12_113051730_113103025	0/0	t0027	2046	1	1	0	0	0	0	copy fasta	DTX1	chr12	113051730	113103025
DTX2_chr7_76456709_76510991	1/1	t0001	773	149	54	40	33	4	16	copy fasta	DTX2	chr7	76456709	76510991
DTX2_chr7_76456709_76510991	0/0	t0002	773	117	18	19	57	5	18	copy fasta	DTX2	chr7	76456709	76510991
DTX2_chr7_76456709_76510991	0/0	t0003	773	3	3	0	0	0	0	copy fasta	DTX2	chr7	76456709	76510991
DTX2_chr7_76456709_76510991	0/0	t0004	773	3	3	0	0	0	0	copy fasta	DTX2	chr7	76456709	76510991
DTX2_chr7_76456709_76510991	0/0	t0005	773	2	0	1	0	1	0	copy fasta	DTX2	chr7	76456709	76510991
DTX2_chr7_76456709_76510991	0/0	t0006	773	1	1	0	0	0	0	copy fasta	DTX2	chr7	76456709	76510991
DTX2_chr7_76456709_76510991	0/0	t0007	773	1	0	1	0	0	0	copy fasta	DTX2	chr7	76456709	76510991
DTX2_chr7_76456709_76510991	0/0	t0008	773	1	0	0	0	0	1	copy fasta	DTX2	chr7	76456709	76510991
DTX2_chr7_76456709_76510991	0/0	t0009	773	1	1	0	0	0	0	copy fasta	DTX2	chr7	76456709	76510991
DTX2_chr7_76456709_76510991	0/0	t0010	773	1	0	0	0	0	1	copy fasta	DTX2	chr7	76456709	76510991
DTX2_chr7_76456709_76510991	0/0	t0011	773	1	0	1	0	0	0	copy fasta	DTX2	chr7	76456709	76510991
DTX3L_chr3_122559338_122580203	0/0	t0001	3546	146	25	21	77	6	17	copy fasta	DTX3L	chr3	122559338	122580203
DTX3L_chr3_122559338_122580203	0/0	t0002	3546	82	7	16	48	1	10	copy fasta	DTX3L	chr3	122559338	122580203
DTX3L_chr3_122559338_122580203	0/1	t0003	3546	65	0	18	35	4	7	copy fasta	DTX3L	chr3	122559338	122580203
DTX3L_chr3_122559338_122580203	0/0	t0004	3546	27	1	7	13	2	4	copy fasta	DTX3L	chr3	122559338	122580203
DTX3L_chr3_122559338_122580203	0/0	t0005	3546	22	1	2	19	0	0	copy fasta	DTX3L	chr3	122559338	122580203
DTX3L_chr3_122559338_122580203	1/0	t0006	3546	21	10	3	2	0	5	copy fasta	DTX3L	chr3	122559338	122580203