JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
DTX3L_chr3_122559338_122580203	0/0	t0007	3545	16	16	0	0	0	0	copy fasta	DTX3L	chr3	122559338	122580203
DTX3L_chr3_122559338_122580203	0/0	t0008	3545	9	8	1	0	0	0	copy fasta	DTX3L	chr3	122559338	122580203
DTX3L_chr3_122559338_122580203	0/0	t0009	3546	9	5	2	2	0	0	copy fasta	DTX3L	chr3	122559338	122580203
DTX3L_chr3_122559338_122580203	0/0	t0010	3546	8	0	4	0	1	3	copy fasta	DTX3L	chr3	122559338	122580203
DTX3L_chr3_122559338_122580203	0/0	t0011	3547	7	5	0	2	0	0	copy fasta	DTX3L	chr3	122559338	122580203
DTX3L_chr3_122559338_122580203	0/0	t0012	3547	6	0	0	6	0	0	copy fasta	DTX3L	chr3	122559338	122580203
DTX3L_chr3_122559338_122580203	0/0	t0013	3545	6	6	0	0	0	0	copy fasta	DTX3L	chr3	122559338	122580203
DTX3L_chr3_122559338_122580203	0/0	t0014	3547	5	1	0	4	0	0	copy fasta	DTX3L	chr3	122559338	122580203
DTX3L_chr3_122559338_122580203	0/0	t0015	3546	4	0	2	0	2	0	copy fasta	DTX3L	chr3	122559338	122580203
DTX3L_chr3_122559338_122580203	0/0	t0016	3546	4	0	1	3	0	0	copy fasta	DTX3L	chr3	122559338	122580203
DTX3L_chr3_122559338_122580203	0/0	t0017	3547	3	0	0	3	0	0	copy fasta	DTX3L	chr3	122559338	122580203
DTX3L_chr3_122559338_122580203	0/0	t0018	3546	3	2	1	0	0	0	copy fasta	DTX3L	chr3	122559338	122580203
DTX3L_chr3_122559338_122580203	0/0	t0019	3546	2	2	0	0	0	0	copy fasta	DTX3L	chr3	122559338	122580203
DTX3L_chr3_122559338_122580203	0/0	t0020	3546	2	0	2	0	0	0	copy fasta	DTX3L	chr3	122559338	122580203
DTX3L_chr3_122559338_122580203	0/0	t0021	3547	2	1	0	1	0	0	copy fasta	DTX3L	chr3	122559338	122580203
DTX3L_chr3_122559338_122580203	0/0	t0022	3546	2	0	1	0	0	1	copy fasta	DTX3L	chr3	122559338	122580203
DTX3L_chr3_122559338_122580203	0/0	t0023	3546	1	0	0	1	0	0	copy fasta	DTX3L	chr3	122559338	122580203
DTX3L_chr3_122559338_122580203	0/0	t0024	3546	1	0	0	1	0	0	copy fasta	DTX3L	chr3	122559338	122580203
DTX3L_chr3_122559338_122580203	0/0	t0025	3546	1	0	1	0	0	0	copy fasta	DTX3L	chr3	122559338	122580203
DTX3L_chr3_122559338_122580203	0/0	t0026	3545	1	1	0	0	0	0	copy fasta	DTX3L	chr3	122559338	122580203
DTX3L_chr3_122559338_122580203	0/0	t0027	3546	1	1	0	0	0	0	copy fasta	DTX3L	chr3	122559338	122580203
DTX3L_chr3_122559338_122580203	0/0	t0028	3557	1	1	0	0	0	0	copy fasta	DTX3L	chr3	122559338	122580203
DTX3L_chr3_122559338_122580203	0/0	t0029	3546	1	1	0	0	0	0	copy fasta	DTX3L	chr3	122559338	122580203
DTX3L_chr3_122559338_122580203	0/0	t0030	3546	1	0	0	1	0	0	copy fasta	DTX3L	chr3	122559338	122580203
DTX3L_chr3_122559338_122580203	0/0	t0031	3545	1	1	0	0	0	0	copy fasta	DTX3L	chr3	122559338	122580203
DTX3L_chr3_122559338_122580203	0/0	t0032	3546	1	0	1	0	0	0	copy fasta	DTX3L	chr3	122559338	122580203
DTX3L_chr3_122559338_122580203	0/0	t0033	3547	1	1	0	0	0	0	copy fasta	DTX3L	chr3	122559338	122580203
DTX3L_chr3_122559338_122580203	0/0	t0034	3546	1	0	0	1	0	0	copy fasta	DTX3L	chr3	122559338	122580203
DTX3L_chr3_122559338_122580203	0/0	t0035	3546	1	0	0	0	1	0	copy fasta	DTX3L	chr3	122559338	122580203
DTX3L_chr3_122559338_122580203	0/0	t0036	3546	1	1	0	0	0	0	copy fasta	DTX3L	chr3	122559338	122580203
DTX3L_chr3_122559338_122580203	0/0	t0037	3546	1	0	1	0	0	0	copy fasta	DTX3L	chr3	122559338	122580203
DTX3L_chr3_122559338_122580203	0/0	t0038	3546	1	0	1	0	0	0	copy fasta	DTX3L	chr3	122559338	122580203
DTX3L_chr3_122559338_122580203	0/0	t0039	3546	1	0	0	0	0	1	copy fasta	DTX3L	chr3	122559338	122580203
DTX3L_chr3_122559338_122580203	0/0	t0040	3546	1	1	0	0	0	0	copy fasta	DTX3L	chr3	122559338	122580203
DTX3L_chr3_122559338_122580203	0/0	t0041	3546	1	0	0	1	0	0	copy fasta	DTX3L	chr3	122559338	122580203
DTX3L_chr3_122559338_122580203	0/0	t0042	3546	1	0	1	0	0	0	copy fasta	DTX3L	chr3	122559338	122580203
DTX3L_chr3_122559338_122580203	0/0	t0043	3546	1	0	0	0	1	0	copy fasta	DTX3L	chr3	122559338	122580203
DTX3_chr12_57599824_57614802	1/1	t0001	985	408	93	74	182	16	41	copy fasta	DTX3	chr12	57599824	57614802
DTX3_chr12_57599824_57614802	0/0	t0002	985	4	4	0	0	0	0	copy fasta	DTX3	chr12	57599824	57614802
DTX3_chr12_57599824_57614802	0/0	t0003	985	3	1	2	0	0	0	copy fasta	DTX3	chr12	57599824	57614802
DTX3_chr12_57599824_57614802	0/0	t0004	985	2	2	0	0	0	0	copy fasta	DTX3	chr12	57599824	57614802
DTX3_chr12_57599824_57614802	0/0	t0005	985	1	0	0	0	0	1	copy fasta	DTX3	chr12	57599824	57614802
DTX4_chr11_59167132_59213588	0/0	t0001	4144	73	10	18	34	2	9	copy fasta	DTX4	chr11	59167132	59213588
DTX4_chr11_59167132_59213588	0/0	t0002	4144	45	11	14	14	2	4	copy fasta	DTX4	chr11	59167132	59213588
DTX4_chr11_59167132_59213588	0/0	t0003	4150	42	15	6	20	0	1	copy fasta	DTX4	chr11	59167132	59213588
DTX4_chr11_59167132_59213588	0/0	t0004	4144	24	1	0	18	2	3	copy fasta	DTX4	chr11	59167132	59213588
DTX4_chr11_59167132_59213588	0/0	t0005	4150	22	0	2	11	2	7	copy fasta	DTX4	chr11	59167132	59213588
DTX4_chr11_59167132_59213588	1/1	t0006	4144	18	2	2	7	0	5	copy fasta	DTX4	chr11	59167132	59213588
DTX4_chr11_59167132_59213588	0/0	t0007	4152	15	3	6	2	2	2	copy fasta	DTX4	chr11	59167132	59213588
DTX4_chr11_59167132_59213588	0/0	t0008	4150	13	1	3	7	0	2	copy fasta	DTX4	chr11	59167132	59213588