JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
DTX4_chr11_59167132_59213588	0/0	t0009	4146	8	0	1	7	0	0	copy fasta	DTX4	chr11	59167132	59213588
DTX4_chr11_59167132_59213588	0/0	t0010	4142	8	8	0	0	0	0	copy fasta	DTX4	chr11	59167132	59213588
DTX4_chr11_59167132_59213588	0/0	t0011	4144	7	0	2	4	0	1	copy fasta	DTX4	chr11	59167132	59213588
DTX4_chr11_59167132_59213588	0/0	t0012	4146	7	5	0	2	0	0	copy fasta	DTX4	chr11	59167132	59213588
DTX4_chr11_59167132_59213588	0/0	t0013	4154	7	1	1	5	0	0	copy fasta	DTX4	chr11	59167132	59213588
DTX4_chr11_59167132_59213588	0/0	t0014	4154	6	0	0	5	0	1	copy fasta	DTX4	chr11	59167132	59213588
DTX4_chr11_59167132_59213588	0/0	t0015	4144	6	6	0	0	0	0	copy fasta	DTX4	chr11	59167132	59213588
DTX4_chr11_59167132_59213588	0/0	t0016	4152	4	0	2	0	1	1	copy fasta	DTX4	chr11	59167132	59213588
DTX4_chr11_59167132_59213588	0/0	t0017	4167	4	0	0	4	0	0	copy fasta	DTX4	chr11	59167132	59213588
DTX4_chr11_59167132_59213588	0/0	t0018	4165	4	0	0	4	0	0	copy fasta	DTX4	chr11	59167132	59213588
DTX4_chr11_59167132_59213588	0/0	t0019	4142	3	0	0	3	0	0	copy fasta	DTX4	chr11	59167132	59213588
DTX4_chr11_59167132_59213588	0/0	t0020	4152	3	0	1	1	0	1	copy fasta	DTX4	chr11	59167132	59213588
DTX4_chr11_59167132_59213588	0/0	t0021	4144	3	0	0	3	0	0	copy fasta	DTX4	chr11	59167132	59213588
DTX4_chr11_59167132_59213588	0/0	t0022	4163	3	3	0	0	0	0	copy fasta	DTX4	chr11	59167132	59213588
DTX4_chr11_59167132_59213588	0/0	t0023	4161	3	3	0	0	0	0	copy fasta	DTX4	chr11	59167132	59213588
DTX4_chr11_59167132_59213588	0/0	t0024	4144	3	1	1	0	1	0	copy fasta	DTX4	chr11	59167132	59213588
DTX4_chr11_59167132_59213588	0/0	t0025	4144	2	0	0	1	0	1	copy fasta	DTX4	chr11	59167132	59213588
DTX4_chr11_59167132_59213588	0/0	t0026	4144	2	0	2	0	0	0	copy fasta	DTX4	chr11	59167132	59213588
DTX4_chr11_59167132_59213588	0/0	t0027	4154	2	0	0	2	0	0	copy fasta	DTX4	chr11	59167132	59213588
DTX4_chr11_59167132_59213588	0/0	t0028	4146	2	0	0	2	0	0	copy fasta	DTX4	chr11	59167132	59213588
DTX4_chr11_59167132_59213588	0/0	t0029	4144	2	0	0	2	0	0	copy fasta	DTX4	chr11	59167132	59213588
DTX4_chr11_59167132_59213588	0/0	t0030	4144	2	0	0	2	0	0	copy fasta	DTX4	chr11	59167132	59213588
DTX4_chr11_59167132_59213588	0/0	t0031	4171	2	0	0	2	0	0	copy fasta	DTX4	chr11	59167132	59213588
DTX4_chr11_59167132_59213588	0/0	t0032	4163	1	1	0	0	0	0	copy fasta	DTX4	chr11	59167132	59213588
DTX4_chr11_59167132_59213588	0/0	t0033	4146	1	0	0	0	0	1	copy fasta	DTX4	chr11	59167132	59213588
DTX4_chr11_59167132_59213588	0/0	t0034	4146	1	0	0	1	0	0	copy fasta	DTX4	chr11	59167132	59213588
DTX4_chr11_59167132_59213588	0/0	t0035	4144	1	0	1	0	0	0	copy fasta	DTX4	chr11	59167132	59213588
DTX4_chr11_59167132_59213588	0/0	t0036	4146	1	1	0	0	0	0	copy fasta	DTX4	chr11	59167132	59213588
DTX4_chr11_59167132_59213588	0/0	t0037	4146	1	0	1	0	0	0	copy fasta	DTX4	chr11	59167132	59213588
DTX4_chr11_59167132_59213588	0/0	t0038	4144	1	1	0	0	0	0	copy fasta	DTX4	chr11	59167132	59213588
DTX4_chr11_59167132_59213588	0/0	t0039	4146	1	0	1	0	0	0	copy fasta	DTX4	chr11	59167132	59213588
DTX4_chr11_59167132_59213588	0/0	t0040	4144	1	0	0	1	0	0	copy fasta	DTX4	chr11	59167132	59213588
DTX4_chr11_59167132_59213588	0/0	t0041	4144	1	0	0	0	0	1	copy fasta	DTX4	chr11	59167132	59213588
DTX4_chr11_59167132_59213588	0/0	t0042	4156	1	1	0	0	0	0	copy fasta	DTX4	chr11	59167132	59213588
DTX4_chr11_59167132_59213588	0/0	t0043	4146	1	0	0	0	0	1	copy fasta	DTX4	chr11	59167132	59213588
DTX4_chr11_59167132_59213588	0/0	t0044	4144	1	1	0	0	0	0	copy fasta	DTX4	chr11	59167132	59213588
DTX4_chr11_59167132_59213588	0/0	t0045	4144	1	1	0	0	0	0	copy fasta	DTX4	chr11	59167132	59213588
DTX4_chr11_59167132_59213588	0/0	t0046	4167	1	0	0	0	0	1	copy fasta	DTX4	chr11	59167132	59213588
DTX4_chr11_59167132_59213588	0/0	t0047	4158	1	0	0	1	0	0	copy fasta	DTX4	chr11	59167132	59213588
DTX4_chr11_59167132_59213588	0/0	t0048	4156	1	0	0	1	0	0	copy fasta	DTX4	chr11	59167132	59213588
DTX4_chr11_59167132_59213588	0/0	t0049	4150	1	1	0	0	0	0	copy fasta	DTX4	chr11	59167132	59213588
DTX4_chr11_59167132_59213588	0/0	t0050	4156	1	1	0	0	0	0	copy fasta	DTX4	chr11	59167132	59213588
DTX4_chr11_59167132_59213588	0/0	t0051	4144	1	0	0	0	1	0	copy fasta	DTX4	chr11	59167132	59213588
DTX4_chr11_59167132_59213588	0/0	t0052	4165	1	0	0	1	0	0	copy fasta	DTX4	chr11	59167132	59213588
DTX4_chr11_59167132_59213588	0/0	t0053	4179	1	0	0	1	0	0	copy fasta	DTX4	chr11	59167132	59213588
DTX4_chr11_59167132_59213588	0/0	t0054	4175	1	0	0	1	0	0	copy fasta	DTX4	chr11	59167132	59213588
DTX4_chr11_59167132_59213588	0/0	t0055	4169	1	0	0	1	0	0	copy fasta	DTX4	chr11	59167132	59213588
DTX4_chr11_59167132_59213588	0/0	t0056	4167	1	1	0	0	0	0	copy fasta	DTX4	chr11	59167132	59213588
DTX4_chr11_59167132_59213588	0/0	t0057	4165	1	1	0	0	0	0	copy fasta	DTX4	chr11	59167132	59213588
DTX4_chr11_59167132_59213588	0/0	t0058	4146	1	0	0	1	0	0	copy fasta	DTX4	chr11	59167132	59213588