JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
DTX4_chr11_59167132_59213588	0/0	t0059	4144	1	1	0	0	0	0	copy fasta	DTX4	chr11	59167132	59213588
DTX4_chr11_59167132_59213588	0/0	t0060	4144	1	0	0	0	0	1	copy fasta	DTX4	chr11	59167132	59213588
DTX4_chr11_59167132_59213588	0/0	t0061	4158	1	1	0	0	0	0	copy fasta	DTX4	chr11	59167132	59213588
DTX4_chr11_59167132_59213588	0/0	t0062	4156	1	0	0	1	0	0	copy fasta	DTX4	chr11	59167132	59213588
DTX4_chr11_59167132_59213588	0/0	t0063	4150	1	0	1	0	0	0	copy fasta	DTX4	chr11	59167132	59213588
DTX4_chr11_59167132_59213588	0/0	t0064	4150	1	0	0	0	0	1	copy fasta	DTX4	chr11	59167132	59213588
DTX4_chr11_59167132_59213588	0/0	t0065	4148	1	1	0	0	0	0	copy fasta	DTX4	chr11	59167132	59213588
DTX4_chr11_59167132_59213588	0/0	t0066	4150	1	1	0	0	0	0	copy fasta	DTX4	chr11	59167132	59213588
DTX4_chr11_59167132_59213588	0/0	t0067	4154	1	1	0	0	0	0	copy fasta	DTX4	chr11	59167132	59213588
DTX4_chr11_59167132_59213588	0/0	t0068	4144	1	1	0	0	0	0	copy fasta	DTX4	chr11	59167132	59213588
DTX4_chr11_59167132_59213588	0/0	t0069	4156	1	1	0	0	0	0	copy fasta	DTX4	chr11	59167132	59213588
DTX4_chr11_59167132_59213588	0/0	t0070	4156	1	1	0	0	0	0	copy fasta	DTX4	chr11	59167132	59213588
DTX4_chr11_59167132_59213588	0/0	t0071	4154	1	1	0	0	0	0	copy fasta	DTX4	chr11	59167132	59213588
DTX4_chr11_59167132_59213588	0/0	t0072	4154	1	1	0	0	0	0	copy fasta	DTX4	chr11	59167132	59213588
DTX4_chr11_59167132_59213588	0/0	t0073	4152	1	1	0	0	0	0	copy fasta	DTX4	chr11	59167132	59213588
DTX4_chr11_59167132_59213588	0/0	t0074	4154	1	1	0	0	0	0	copy fasta	DTX4	chr11	59167132	59213588
DTX4_chr11_59167132_59213588	0/0	t0075	4165	1	0	1	0	0	0	copy fasta	DTX4	chr11	59167132	59213588
DTX4_chr11_59167132_59213588	0/0	t0076	4154	1	0	0	0	1	0	copy fasta	DTX4	chr11	59167132	59213588
DTYMK_chr2_241670747_241691815	1/0	t0001	413	167	46	11	85	4	20	copy fasta	DTYMK	chr2	241670747	241691815
DTYMK_chr2_241670747_241691815	0/1	t0002	413	129	33	32	43	6	14	copy fasta	DTYMK	chr2	241670747	241691815
DTYMK_chr2_241670747_241691815	0/0	t0003	412	105	9	13	70	5	8	copy fasta	DTYMK	chr2	241670747	241691815
DTYMK_chr2_241670747_241691815	0/0	t0004	412	5	3	2	0	0	0	copy fasta	DTYMK	chr2	241670747	241691815
DTYMK_chr2_241670747_241691815	0/0	t0005	412	5	3	2	0	0	0	copy fasta	DTYMK	chr2	241670747	241691815
DTYMK_chr2_241670747_241691815	0/0	t0006	411	5	2	3	0	0	0	copy fasta	DTYMK	chr2	241670747	241691815
DTYMK_chr2_241670747_241691815	0/0	t0007	412	2	0	0	2	0	0	copy fasta	DTYMK	chr2	241670747	241691815
DTYMK_chr2_241670747_241691815	0/0	t0008	413	2	0	1	0	1	0	copy fasta	DTYMK	chr2	241670747	241691815
DUOX1_chr15_45124994_45170574	0/0	t0001	828	102	8	32	51	1	10	copy fasta	DUOX1	chr15	45124994	45170574
DUOX1_chr15_45124994_45170574	0/1	t0002	828	67	18	22	7	8	11	copy fasta	DUOX1	chr15	45124994	45170574
DUOX1_chr15_45124994_45170574	0/0	t0003	828	66	16	5	38	0	7	copy fasta	DUOX1	chr15	45124994	45170574
DUOX1_chr15_45124994_45170574	0/0	t0004	828	63	12	7	44	0	0	copy fasta	DUOX1	chr15	45124994	45170574
DUOX1_chr15_45124994_45170574	0/0	t0005	828	61	16	2	29	1	13	copy fasta	DUOX1	chr15	45124994	45170574
DUOX1_chr15_45124994_45170574	0/0	t0006	828	24	21	2	0	0	1	copy fasta	DUOX1	chr15	45124994	45170574
DUOX1_chr15_45124994_45170574	1/0	t0007	828	1	0	0	0	0	0	copy fasta	DUOX1	chr15	45124994	45170574
DUOX1_chr15_45124994_45170574	0/0	t0008	828	1	1	0	0	0	0	copy fasta	DUOX1	chr15	45124994	45170574
DUOX1_chr15_45124994_45170574	0/0	t0009	828	1	0	0	1	0	0	copy fasta	DUOX1	chr15	45124994	45170574
DUOX2_chr15_45087650_45119172	1/1	t0001	1715	163	16	45	56	11	33	copy fasta	DUOX2	chr15	45087650	45119172
DUOX2_chr15_45087650_45119172	0/0	t0002	1715	35	9	7	15	1	3	copy fasta	DUOX2	chr15	45087650	45119172
DUOX2_chr15_45087650_45119172	0/0	t0003	1715	30	27	3	0	0	0	copy fasta	DUOX2	chr15	45087650	45119172
DUOX2_chr15_45087650_45119172	0/0	t0004	1715	16	14	2	0	0	0	copy fasta	DUOX2	chr15	45087650	45119172
DUOX2_chr15_45087650_45119172	0/0	t0005	1715	14	13	1	0	0	0	copy fasta	DUOX2	chr15	45087650	45119172
DUOX2_chr15_45087650_45119172	0/0	t0006	1715	10	9	1	0	0	0	copy fasta	DUOX2	chr15	45087650	45119172
DUOX2_chr15_45087650_45119172	0/0	t0007	1715	5	1	3	1	0	0	copy fasta	DUOX2	chr15	45087650	45119172
DUOX2_chr15_45087650_45119172	0/0	t0008	1715	2	0	0	2	0	0	copy fasta	DUOX2	chr15	45087650	45119172
DUOX2_chr15_45087650_45119172	0/0	t0009	1715	2	0	0	2	0	0	copy fasta	DUOX2	chr15	45087650	45119172
DUOX2_chr15_45087650_45119172	0/0	t0010	1715	2	2	0	0	0	0	copy fasta	DUOX2	chr15	45087650	45119172
DUOX2_chr15_45087650_45119172	0/0	t0011	1715	1	1	0	0	0	0	copy fasta	DUOX2	chr15	45087650	45119172
DUOXA1_chr15_45112366_45134879	0/1	t0001	2071	157	15	37	74	15	15	copy fasta	DUOXA1	chr15	45112366	45134879
DUOXA1_chr15_45112366_45134879	1/0	t0002	2071	75	23	10	22	2	17	copy fasta	DUOXA1	chr15	45112366	45134879
DUOXA1_chr15_45112366_45134879	0/0	t0003	2071	54	2	3	47	0	2	copy fasta	DUOXA1	chr15	45112366	45134879
DUOXA1_chr15_45112366_45134879	0/0	t0004	2071	34	18	11	0	1	4	copy fasta	DUOXA1	chr15	45112366	45134879