JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
DUOXA1_chr15_45112366_45134879	0/0	t0005	2071	21	5	6	8	0	2	copy fasta	DUOXA1	chr15	45112366	45134879
DUOXA1_chr15_45112366_45134879	0/0	t0006	2071	17	15	2	0	0	0	copy fasta	DUOXA1	chr15	45112366	45134879
DUOXA1_chr15_45112366_45134879	0/0	t0007	2071	7	6	1	0	0	0	copy fasta	DUOXA1	chr15	45112366	45134879
DUOXA1_chr15_45112366_45134879	0/0	t0008	2071	6	4	0	2	0	0	copy fasta	DUOXA1	chr15	45112366	45134879
DUOXA1_chr15_45112366_45134879	0/0	t0009	2071	5	0	0	5	0	0	copy fasta	DUOXA1	chr15	45112366	45134879
DUOXA1_chr15_45112366_45134879	0/0	t0010	2071	2	2	0	0	0	0	copy fasta	DUOXA1	chr15	45112366	45134879
DUOXA1_chr15_45112366_45134879	0/0	t0011	2071	2	0	0	0	0	2	copy fasta	DUOXA1	chr15	45112366	45134879
DUOXA1_chr15_45112366_45134879	0/0	t0012	2071	2	0	0	2	0	0	copy fasta	DUOXA1	chr15	45112366	45134879
DUOXA1_chr15_45112366_45134879	0/0	t0013	2071	2	2	0	0	0	0	copy fasta	DUOXA1	chr15	45112366	45134879
DUOXA1_chr15_45112366_45134879	0/0	t0014	2071	2	0	0	2	0	0	copy fasta	DUOXA1	chr15	45112366	45134879
DUOXA1_chr15_45112366_45134879	0/0	t0015	2071	2	1	1	0	0	0	copy fasta	DUOXA1	chr15	45112366	45134879
DUOXA1_chr15_45112366_45134879	0/0	t0016	2071	1	1	0	0	0	0	copy fasta	DUOXA1	chr15	45112366	45134879
DUOXA1_chr15_45112366_45134879	0/0	t0017	2071	1	1	0	0	0	0	copy fasta	DUOXA1	chr15	45112366	45134879
DUOXA1_chr15_45112366_45134879	0/0	t0018	2071	1	0	0	1	0	0	copy fasta	DUOXA1	chr15	45112366	45134879
DUOXA1_chr15_45112366_45134879	0/0	t0019	2071	1	1	0	0	0	0	copy fasta	DUOXA1	chr15	45112366	45134879
DUOXA1_chr15_45112366_45134879	0/0	t0020	2071	1	1	0	0	0	0	copy fasta	DUOXA1	chr15	45112366	45134879
DUOXA1_chr15_45112366_45134879	0/0	t0021	2071	1	0	0	1	0	0	copy fasta	DUOXA1	chr15	45112366	45134879
DUOXA1_chr15_45112366_45134879	0/0	t0022	2071	1	1	0	0	0	0	copy fasta	DUOXA1	chr15	45112366	45134879
DUOXA1_chr15_45112366_45134879	0/0	t0023	2071	1	0	1	0	0	0	copy fasta	DUOXA1	chr15	45112366	45134879
DUOXA2_chr15_45109326_45123421	1/1	t0001	793	357	97	64	145	8	41	copy fasta	DUOXA2	chr15	45109326	45123421
DUOXA2_chr15_45109326_45123421	0/0	t0002	793	9	0	4	0	5	0	copy fasta	DUOXA2	chr15	45109326	45123421
DUOXA2_chr15_45109326_45123421	0/0	t0003	793	1	0	0	0	1	0	copy fasta	DUOXA2	chr15	45109326	45123421
DUOXA2_chr15_45109326_45123421	0/0	t0004	793	1	1	0	0	0	0	copy fasta	DUOXA2	chr15	45109326	45123421
DUOXA2_chr15_45109326_45123421	0/0	t0005	793	1	0	0	0	0	1	copy fasta	DUOXA2	chr15	45109326	45123421
DUOXA2_chr15_45109326_45123421	0/0	t0006	793	1	0	0	1	0	0	copy fasta	DUOXA2	chr15	45109326	45123421
DUS1L_chr17_82052506_82070804	1/1	t0001	812	228	52	38	109	5	22	copy fasta	DUS1L	chr17	82052506	82070804
DUS1L_chr17_82052506_82070804	0/0	t0002	812	180	31	49	63	13	24	copy fasta	DUS1L	chr17	82052506	82070804
DUS1L_chr17_82052506_82070804	0/0	t0003	812	8	8	0	0	0	0	copy fasta	DUS1L	chr17	82052506	82070804
DUS1L_chr17_82052506_82070804	0/0	t0004	812	2	2	0	0	0	0	copy fasta	DUS1L	chr17	82052506	82070804
DUS1L_chr17_82052506_82070804	0/0	t0005	812	2	2	0	0	0	0	copy fasta	DUS1L	chr17	82052506	82070804
DUS1L_chr17_82052506_82070804	0/0	t0006	812	1	0	0	1	0	0	copy fasta	DUS1L	chr17	82052506	82070804
DUS1L_chr17_82052506_82070804	0/0	t0007	812	1	1	0	0	0	0	copy fasta	DUS1L	chr17	82052506	82070804
DUS1L_chr17_82052506_82070804	0/0	t0008	812	1	0	0	1	0	0	copy fasta	DUS1L	chr17	82052506	82070804
DUS1L_chr17_82052506_82070804	0/0	t0009	812	1	0	1	0	0	0	copy fasta	DUS1L	chr17	82052506	82070804
DUS2_chr16_68018284_68084320	1/1	t0001	501	225	71	40	66	10	36	copy fasta	DUS2	chr16	68018284	68084320
DUS2_chr16_68018284_68084320	0/0	t0002	501	8	8	0	0	0	0	copy fasta	DUS2	chr16	68018284	68084320
DUS2_chr16_68018284_68084320	0/0	t0003	501	1	1	0	0	0	0	copy fasta	DUS2	chr16	68018284	68084320
DUS3L_chr19_5780140_5796163	0/0	t0001	86	186	74	14	80	4	14	copy fasta	DUS3L	chr19	5780140	5796163
DUS3L_chr19_5780140_5796163	1/1	t0002	86	175	12	55	72	10	24	copy fasta	DUS3L	chr19	5780140	5796163
DUS3L_chr19_5780140_5796163	0/0	t0003	86	2	1	1	0	0	0	copy fasta	DUS3L	chr19	5780140	5796163
DUS3L_chr19_5780140_5796163	0/0	t0004	86	1	1	0	0	0	0	copy fasta	DUS3L	chr19	5780140	5796163
DUS4L_chr7_107558971_107583523	0/0	t0001	1313	130	7	35	64	6	18	copy fasta	DUS4L	chr7	107558971	107583523
DUS4L_chr7_107558971_107583523	0/0	t0002	1313	93	1	16	65	4	7	copy fasta	DUS4L	chr7	107558971	107583523
DUS4L_chr7_107558971_107583523	1/1	t0003	1313	64	16	15	20	6	5	copy fasta	DUS4L	chr7	107558971	107583523
DUS4L_chr7_107558971_107583523	0/0	t0004	1313	55	30	8	14	0	3	copy fasta	DUS4L	chr7	107558971	107583523
DUS4L_chr7_107558971_107583523	0/0	t0005	1310	22	0	0	22	0	0	copy fasta	DUS4L	chr7	107558971	107583523
DUS4L_chr7_107558971_107583523	0/0	t0006	1313	13	13	0	0	0	0	copy fasta	DUS4L	chr7	107558971	107583523
DUS4L_chr7_107558971_107583523	0/0	t0007	1313	10	3	2	0	2	3	copy fasta	DUS4L	chr7	107558971	107583523
DUS4L_chr7_107558971_107583523	0/0	t0008	1313	7	7	0	0	0	0	copy fasta	DUS4L	chr7	107558971	107583523
DUS4L_chr7_107558971_107583523	0/0	t0009	1313	6	6	0	0	0	0	copy fasta	DUS4L	chr7	107558971	107583523