JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
DUS4L_chr7_107558971_107583523	0/0	t0010	1313	3	3	0	0	0	0	copy fasta	DUS4L	chr7	107558971	107583523
DUS4L_chr7_107558971_107583523	0/0	t0011	1313	3	3	0	0	0	0	copy fasta	DUS4L	chr7	107558971	107583523
DUS4L_chr7_107558971_107583523	0/0	t0012	1313	2	2	0	0	0	0	copy fasta	DUS4L	chr7	107558971	107583523
DUS4L_chr7_107558971_107583523	0/0	t0013	1313	1	0	1	0	0	0	copy fasta	DUS4L	chr7	107558971	107583523
DUS4L_chr7_107558971_107583523	0/0	t0014	1313	1	0	1	0	0	0	copy fasta	DUS4L	chr7	107558971	107583523
DUS4L_chr7_107558971_107583523	0/0	t0015	1313	1	0	0	1	0	0	copy fasta	DUS4L	chr7	107558971	107583523
DUS4L_chr7_107558971_107583523	0/0	t0016	1313	1	1	0	0	0	0	copy fasta	DUS4L	chr7	107558971	107583523
DUSP10_chr1_221696424_221747089	0/1	t0001	1140	192	57	30	80	8	16	copy fasta	DUSP10	chr1	221696424	221747089
DUSP10_chr1_221696424_221747089	1/0	t0002	1141	149	15	25	81	4	23	copy fasta	DUSP10	chr1	221696424	221747089
DUSP10_chr1_221696424_221747089	0/0	t0003	1141	15	0	4	10	0	1	copy fasta	DUSP10	chr1	221696424	221747089
DUSP10_chr1_221696424_221747089	0/0	t0004	1141	13	8	3	0	2	0	copy fasta	DUSP10	chr1	221696424	221747089
DUSP10_chr1_221696424_221747089	0/0	t0005	1145	7	7	0	0	0	0	copy fasta	DUSP10	chr1	221696424	221747089
DUSP10_chr1_221696424_221747089	0/0	t0006	1141	6	0	0	6	0	0	copy fasta	DUSP10	chr1	221696424	221747089
DUSP10_chr1_221696424_221747089	0/0	t0007	1142	4	0	0	4	0	0	copy fasta	DUSP10	chr1	221696424	221747089
DUSP10_chr1_221696424_221747089	0/0	t0008	1140	2	0	0	0	0	2	copy fasta	DUSP10	chr1	221696424	221747089
DUSP10_chr1_221696424_221747089	0/0	t0009	1144	2	1	1	0	0	0	copy fasta	DUSP10	chr1	221696424	221747089
DUSP10_chr1_221696424_221747089	0/0	t0010	1140	2	1	1	0	0	0	copy fasta	DUSP10	chr1	221696424	221747089
DUSP10_chr1_221696424_221747089	0/0	t0011	1141	2	0	0	1	0	1	copy fasta	DUSP10	chr1	221696424	221747089
DUSP10_chr1_221696424_221747089	0/0	t0012	1140	1	1	0	0	0	0	copy fasta	DUSP10	chr1	221696424	221747089
DUSP10_chr1_221696424_221747089	0/0	t0013	1142	1	0	0	0	0	1	copy fasta	DUSP10	chr1	221696424	221747089
DUSP11_chr2_73757213_73785103	0/1	t0001	578	209	39	40	97	8	24	copy fasta	DUSP11	chr2	73757213	73785103
DUSP11_chr2_73757213_73785103	1/0	t0002	578	172	50	32	69	4	16	copy fasta	DUSP11	chr2	73757213	73785103
DUSP11_chr2_73757213_73785103	0/0	t0003	578	2	2	0	0	0	0	copy fasta	DUSP11	chr2	73757213	73785103
DUSP11_chr2_73757213_73785103	0/0	t0004	578	1	1	0	0	0	0	copy fasta	DUSP11	chr2	73757213	73785103
DUSP11_chr2_73757213_73785103	0/0	t0005	578	1	0	0	1	0	0	copy fasta	DUSP11	chr2	73757213	73785103
DUSP11_chr2_73757213_73785103	0/0	t0006	578	1	0	0	1	0	0	copy fasta	DUSP11	chr2	73757213	73785103
DUSP12_chr1_161744786_161762238	1/1	t0001	308	395	60	76	206	18	33	copy fasta	DUSP12	chr1	161744786	161762238
DUSP12_chr1_161744786_161762238	0/0	t0002	308	42	26	1	9	0	6	copy fasta	DUSP12	chr1	161744786	161762238
DUSP12_chr1_161744786_161762238	0/0	t0003	308	5	1	4	0	0	0	copy fasta	DUSP12	chr1	161744786	161762238
DUSP12_chr1_161744786_161762238	0/0	t0004	308	2	0	1	0	0	1	copy fasta	DUSP12	chr1	161744786	161762238
DUSP12_chr1_161744786_161762238	0/0	t0005	308	1	1	0	0	0	0	copy fasta	DUSP12	chr1	161744786	161762238
DUSP12_chr1_161744786_161762238	0/0	t0006	308	1	0	0	1	0	0	copy fasta	DUSP12	chr1	161744786	161762238
DUSP13_chr10_75089436_75104512	1/1	t0001	316	399	96	76	176	12	37	copy fasta	DUSP13	chr10	75089436	75104512
DUSP13_chr10_75089436_75104512	0/0	t0002	316	2	0	0	0	0	2	copy fasta	DUSP13	chr10	75089436	75104512
DUSP13_chr10_75089436_75104512	0/0	t0003	316	2	0	0	2	0	0	copy fasta	DUSP13	chr10	75089436	75104512
DUSP13_chr10_75089436_75104512	0/0	t0004	316	1	0	0	0	0	1	copy fasta	DUSP13	chr10	75089436	75104512
DUSP14_chr17_37484891_37518498	0/0	t0001	872	163	18	11	115	2	17	copy fasta	DUSP14	chr17	37484891	37518498
DUSP14_chr17_37484891_37518498	0/0	t0002	872	139	37	48	39	5	10	copy fasta	DUSP14	chr17	37484891	37518498
DUSP14_chr17_37484891_37518498	0/0	t0003	878	46	5	11	14	5	11	copy fasta	DUSP14	chr17	37484891	37518498
DUSP14_chr17_37484891_37518498	0/1	t0004	872	43	4	2	31	3	2	copy fasta	DUSP14	chr17	37484891	37518498
DUSP14_chr17_37484891_37518498	0/0	t0005	873	13	12	1	0	0	0	copy fasta	DUSP14	chr17	37484891	37518498
DUSP14_chr17_37484891_37518498	0/0	t0006	878	4	4	0	0	0	0	copy fasta	DUSP14	chr17	37484891	37518498
DUSP14_chr17_37484891_37518498	0/0	t0007	877	3	3	0	0	0	0	copy fasta	DUSP14	chr17	37484891	37518498
DUSP14_chr17_37484891_37518498	0/0	t0008	872	2	0	0	2	0	0	copy fasta	DUSP14	chr17	37484891	37518498
DUSP14_chr17_37484891_37518498	0/0	t0009	877	2	0	1	1	0	0	copy fasta	DUSP14	chr17	37484891	37518498
DUSP14_chr17_37484891_37518498	0/0	t0010	872	1	1	0	0	0	0	copy fasta	DUSP14	chr17	37484891	37518498
DUSP14_chr17_37484891_37518498	0/0	t0011	872	1	0	0	1	0	0	copy fasta	DUSP14	chr17	37484891	37518498
DUSP14_chr17_37484891_37518498	0/0	t0012	872	1	0	0	1	0	0	copy fasta	DUSP14	chr17	37484891	37518498
DUSP14_chr17_37484891_37518498	0/0	t0013	858	1	0	0	0	1	0	copy fasta	DUSP14	chr17	37484891	37518498
DUSP14_chr17_37484891_37518498	0/0	t0014	878	1	1	0	0	0	0	copy fasta	DUSP14	chr17	37484891	37518498