JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
DUSP14_chr17_37484891_37518498	0/0	t0015	877	1	1	0	0	0	0	copy fasta	DUSP14	chr17	37484891	37518498
DUSP15_chr20_31856077_31875527	1/0	t0001	517	339	77	66	147	15	33	copy fasta	DUSP15	chr20	31856077	31875527
DUSP15_chr20_31856077_31875527	0/1	t0002	517	26	16	2	0	2	5	copy fasta	DUSP15	chr20	31856077	31875527
DUSP15_chr20_31856077_31875527	0/0	t0003	517	5	1	4	0	0	0	copy fasta	DUSP15	chr20	31856077	31875527
DUSP15_chr20_31856077_31875527	0/0	t0004	517	3	1	1	0	0	1	copy fasta	DUSP15	chr20	31856077	31875527
DUSP15_chr20_31856077_31875527	0/0	t0005	517	2	0	0	1	0	1	copy fasta	DUSP15	chr20	31856077	31875527
DUSP15_chr20_31856077_31875527	0/0	t0006	517	1	1	0	0	0	0	copy fasta	DUSP15	chr20	31856077	31875527
DUSP15_chr20_31856077_31875527	0/0	t0007	517	1	0	0	0	1	0	copy fasta	DUSP15	chr20	31856077	31875527
DUSP15_chr20_31856077_31875527	0/0	t0008	517	1	0	1	0	0	0	copy fasta	DUSP15	chr20	31856077	31875527
DUSP16_chr12_12468282_12567863	0/0	t0001	4663	103	28	26	33	4	12	copy fasta	DUSP16	chr12	12468282	12567863
DUSP16_chr12_12468282_12567863	0/0	t0002	4663	43	1	14	14	5	9	copy fasta	DUSP16	chr12	12468282	12567863
DUSP16_chr12_12468282_12567863	0/0	t0003	4663	40	1	5	31	0	3	copy fasta	DUSP16	chr12	12468282	12567863
DUSP16_chr12_12468282_12567863	0/0	t0004	4664	30	4	0	21	0	5	copy fasta	DUSP16	chr12	12468282	12567863
DUSP16_chr12_12468282_12567863	0/0	t0005	4661	27	0	0	27	0	0	copy fasta	DUSP16	chr12	12468282	12567863
DUSP16_chr12_12468282_12567863	0/0	t0006	4663	12	0	1	10	0	1	copy fasta	DUSP16	chr12	12468282	12567863
DUSP16_chr12_12468282_12567863	0/0	t0007	4662	9	0	0	8	0	1	copy fasta	DUSP16	chr12	12468282	12567863
DUSP16_chr12_12468282_12567863	0/0	t0008	4663	9	3	3	1	2	0	copy fasta	DUSP16	chr12	12468282	12567863
DUSP16_chr12_12468282_12567863	0/0	t0009	4661	5	0	4	0	1	0	copy fasta	DUSP16	chr12	12468282	12567863
DUSP16_chr12_12468282_12567863	0/0	t0010	4663	5	5	0	0	0	0	copy fasta	DUSP16	chr12	12468282	12567863
DUSP16_chr12_12468282_12567863	0/0	t0011	4663	4	0	0	4	0	0	copy fasta	DUSP16	chr12	12468282	12567863
DUSP16_chr12_12468282_12567863	0/0	t0012	4660	2	0	0	2	0	0	copy fasta	DUSP16	chr12	12468282	12567863
DUSP16_chr12_12468282_12567863	0/0	t0013	4664	2	0	0	2	0	0	copy fasta	DUSP16	chr12	12468282	12567863
DUSP16_chr12_12468282_12567863	0/0	t0014	4662	2	2	0	0	0	0	copy fasta	DUSP16	chr12	12468282	12567863
DUSP16_chr12_12468282_12567863	0/0	t0015	4664	2	0	0	1	0	1	copy fasta	DUSP16	chr12	12468282	12567863
DUSP16_chr12_12468282_12567863	0/0	t0016	4663	2	1	1	0	0	0	copy fasta	DUSP16	chr12	12468282	12567863
DUSP16_chr12_12468282_12567863	0/0	t0017	4664	2	2	0	0	0	0	copy fasta	DUSP16	chr12	12468282	12567863
DUSP16_chr12_12468282_12567863	0/0	t0018	4663	2	0	0	2	0	0	copy fasta	DUSP16	chr12	12468282	12567863
DUSP16_chr12_12468282_12567863	0/0	t0019	4663	2	0	0	1	0	1	copy fasta	DUSP16	chr12	12468282	12567863
DUSP16_chr12_12468282_12567863	0/0	t0020	4664	2	2	0	0	0	0	copy fasta	DUSP16	chr12	12468282	12567863
DUSP16_chr12_12468282_12567863	0/0	t0021	4663	2	2	0	0	0	0	copy fasta	DUSP16	chr12	12468282	12567863
DUSP16_chr12_12468282_12567863	0/0	t0022	4663	1	1	0	0	0	0	copy fasta	DUSP16	chr12	12468282	12567863
DUSP16_chr12_12468282_12567863	0/0	t0023	4663	1	0	0	1	0	0	copy fasta	DUSP16	chr12	12468282	12567863
DUSP16_chr12_12468282_12567863	0/0	t0024	4663	1	0	0	1	0	0	copy fasta	DUSP16	chr12	12468282	12567863
DUSP16_chr12_12468282_12567863	0/0	t0025	4662	1	0	0	1	0	0	copy fasta	DUSP16	chr12	12468282	12567863
DUSP16_chr12_12468282_12567863	0/0	t0026	4663	1	0	1	0	0	0	copy fasta	DUSP16	chr12	12468282	12567863
DUSP16_chr12_12468282_12567863	0/0	t0027	4663	1	0	0	0	1	0	copy fasta	DUSP16	chr12	12468282	12567863
DUSP16_chr12_12468282_12567863	0/0	t0028	4663	1	0	0	1	0	0	copy fasta	DUSP16	chr12	12468282	12567863
DUSP16_chr12_12468282_12567863	0/0	t0029	4663	1	0	0	1	0	0	copy fasta	DUSP16	chr12	12468282	12567863
DUSP16_chr12_12468282_12567863	0/0	t0030	4663	1	0	0	1	0	0	copy fasta	DUSP16	chr12	12468282	12567863
DUSP16_chr12_12468282_12567863	0/0	t0031	4663	1	0	0	0	1	0	copy fasta	DUSP16	chr12	12468282	12567863
DUSP16_chr12_12468282_12567863	0/0	t0032	4661	1	0	1	0	0	0	copy fasta	DUSP16	chr12	12468282	12567863
DUSP16_chr12_12468282_12567863	0/0	t0033	4664	1	1	0	0	0	0	copy fasta	DUSP16	chr12	12468282	12567863
DUSP16_chr12_12468282_12567863	0/0	t0034	4664	1	0	1	0	0	0	copy fasta	DUSP16	chr12	12468282	12567863
DUSP16_chr12_12468282_12567863	0/0	t0035	4664	1	1	0	0	0	0	copy fasta	DUSP16	chr12	12468282	12567863
DUSP16_chr12_12468282_12567863	0/0	t0036	4664	1	0	0	0	0	1	copy fasta	DUSP16	chr12	12468282	12567863
DUSP16_chr12_12468282_12567863	0/0	t0037	4663	1	1	0	0	0	0	copy fasta	DUSP16	chr12	12468282	12567863
DUSP16_chr12_12468282_12567863	0/0	t0038	4664	1	1	0	0	0	0	copy fasta	DUSP16	chr12	12468282	12567863
DUSP16_chr12_12468282_12567863	0/0	t0039	4664	1	0	0	1	0	0	copy fasta	DUSP16	chr12	12468282	12567863
DUSP16_chr12_12468282_12567863	0/0	t0040	4663	1	1	0	0	0	0	copy fasta	DUSP16	chr12	12468282	12567863
DUSP16_chr12_12468282_12567863	0/0	t0041	4663	1	1	0	0	0	0	copy fasta	DUSP16	chr12	12468282	12567863