JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
DUSP16_chr12_12468282_12567863	0/0	t0042	4663	1	1	0	0	0	0	copy fasta	DUSP16	chr12	12468282	12567863
DUSP16_chr12_12468282_12567863	0/0	t0043	4664	1	0	0	1	0	0	copy fasta	DUSP16	chr12	12468282	12567863
DUSP16_chr12_12468282_12567863	0/0	t0044	4663	1	0	0	1	0	0	copy fasta	DUSP16	chr12	12468282	12567863
DUSP16_chr12_12468282_12567863	0/0	t0045	4663	1	0	0	0	0	1	copy fasta	DUSP16	chr12	12468282	12567863
DUSP16_chr12_12468282_12567863	0/0	t0046	4663	1	1	0	0	0	0	copy fasta	DUSP16	chr12	12468282	12567863
DUSP16_chr12_12468282_12567863	0/0	t0047	4663	1	0	0	0	0	1	copy fasta	DUSP16	chr12	12468282	12567863
DUSP16_chr12_12468282_12567863	0/0	t0048	4663	1	0	0	1	0	0	copy fasta	DUSP16	chr12	12468282	12567863
DUSP16_chr12_12468282_12567863	1/0	t0049	4664	1	0	0	0	0	0	copy fasta	DUSP16	chr12	12468282	12567863
DUSP16_chr12_12468282_12567863	0/0	t0050	4664	1	0	0	1	0	0	copy fasta	DUSP16	chr12	12468282	12567863
DUSP16_chr12_12468282_12567863	0/0	t0051	4663	1	1	0	0	0	0	copy fasta	DUSP16	chr12	12468282	12567863
DUSP16_chr12_12468282_12567863	0/0	t0052	4663	1	0	0	0	0	1	copy fasta	DUSP16	chr12	12468282	12567863
DUSP16_chr12_12468282_12567863	0/0	t0053	4664	1	1	0	0	0	0	copy fasta	DUSP16	chr12	12468282	12567863
DUSP16_chr12_12468282_12567863	0/0	t0054	4663	1	1	0	0	0	0	copy fasta	DUSP16	chr12	12468282	12567863
DUSP16_chr12_12468282_12567863	0/0	t0055	4663	1	1	0	0	0	0	copy fasta	DUSP16	chr12	12468282	12567863
DUSP16_chr12_12468282_12567863	0/0	t0056	4664	1	1	0	0	0	0	copy fasta	DUSP16	chr12	12468282	12567863
DUSP16_chr12_12468282_12567863	0/0	t0057	4663	1	0	0	0	0	1	copy fasta	DUSP16	chr12	12468282	12567863
DUSP16_chr12_12468282_12567863	0/0	t0058	4663	1	0	0	0	0	1	copy fasta	DUSP16	chr12	12468282	12567863
DUSP16_chr12_12468282_12567863	0/0	t0059	4663	1	0	0	0	0	1	copy fasta	DUSP16	chr12	12468282	12567863
DUSP16_chr12_12468282_12567863	0/1	t0060	4663	1	0	0	0	0	0	copy fasta	DUSP16	chr12	12468282	12567863
DUSP16_chr12_12468282_12567863	0/0	t0061	4662	1	1	0	0	0	0	copy fasta	DUSP16	chr12	12468282	12567863
DUSP16_chr12_12468282_12567863	0/0	t0062	4663	1	1	0	0	0	0	copy fasta	DUSP16	chr12	12468282	12567863
DUSP16_chr12_12468282_12567863	0/0	t0063	4663	1	1	0	0	0	0	copy fasta	DUSP16	chr12	12468282	12567863
DUSP16_chr12_12468282_12567863	0/0	t0064	4664	1	1	0	0	0	0	copy fasta	DUSP16	chr12	12468282	12567863
DUSP16_chr12_12468282_12567863	0/0	t0065	4663	1	0	1	0	0	0	copy fasta	DUSP16	chr12	12468282	12567863
DUSP16_chr12_12468282_12567863	0/0	t0066	4664	1	1	0	0	0	0	copy fasta	DUSP16	chr12	12468282	12567863
DUSP18_chr22_30656445_30672875	0/1	t0001	2486	124	2	21	70	5	25	copy fasta	DUSP18	chr22	30656445	30672875
DUSP18_chr22_30656445_30672875	0/0	t0002	2484	58	7	16	28	2	5	copy fasta	DUSP18	chr22	30656445	30672875
DUSP18_chr22_30656445_30672875	0/0	t0003	2475	54	0	6	46	1	1	copy fasta	DUSP18	chr22	30656445	30672875
DUSP18_chr22_30656445_30672875	0/0	t0004	2482	24	21	3	0	0	0	copy fasta	DUSP18	chr22	30656445	30672875
DUSP18_chr22_30656445_30672875	0/0	t0005	2485	19	4	12	0	2	1	copy fasta	DUSP18	chr22	30656445	30672875
DUSP18_chr22_30656445_30672875	0/0	t0006	2483	17	11	1	4	0	1	copy fasta	DUSP18	chr22	30656445	30672875
DUSP18_chr22_30656445_30672875	0/0	t0007	2475	14	3	3	8	0	0	copy fasta	DUSP18	chr22	30656445	30672875
DUSP18_chr22_30656445_30672875	1/0	t0008	2484	7	0	4	0	2	0	copy fasta	DUSP18	chr22	30656445	30672875
DUSP18_chr22_30656445_30672875	0/0	t0009	2484	6	3	2	0	1	0	copy fasta	DUSP18	chr22	30656445	30672875
DUSP18_chr22_30656445_30672875	0/0	t0010	2486	6	0	0	6	0	0	copy fasta	DUSP18	chr22	30656445	30672875
DUSP18_chr22_30656445_30672875	0/0	t0011	2486	5	0	0	5	0	0	copy fasta	DUSP18	chr22	30656445	30672875
DUSP18_chr22_30656445_30672875	0/0	t0012	2484	5	5	0	0	0	0	copy fasta	DUSP18	chr22	30656445	30672875
DUSP18_chr22_30656445_30672875	0/0	t0013	2485	5	0	4	0	1	0	copy fasta	DUSP18	chr22	30656445	30672875
DUSP18_chr22_30656445_30672875	0/0	t0014	2486	4	0	0	4	0	0	copy fasta	DUSP18	chr22	30656445	30672875
DUSP18_chr22_30656445_30672875	0/0	t0015	2485	4	0	2	0	0	2	copy fasta	DUSP18	chr22	30656445	30672875
DUSP18_chr22_30656445_30672875	0/0	t0016	2486	3	3	0	0	0	0	copy fasta	DUSP18	chr22	30656445	30672875
DUSP18_chr22_30656445_30672875	0/0	t0017	2485	3	0	0	3	0	0	copy fasta	DUSP18	chr22	30656445	30672875
DUSP18_chr22_30656445_30672875	0/0	t0018	2484	3	3	0	0	0	0	copy fasta	DUSP18	chr22	30656445	30672875
DUSP18_chr22_30656445_30672875	0/0	t0019	2483	3	2	0	0	1	0	copy fasta	DUSP18	chr22	30656445	30672875
DUSP18_chr22_30656445_30672875	0/0	t0020	2483	3	2	1	0	0	0	copy fasta	DUSP18	chr22	30656445	30672875
DUSP18_chr22_30656445_30672875	0/0	t0021	2482	3	3	0	0	0	0	copy fasta	DUSP18	chr22	30656445	30672875
DUSP18_chr22_30656445_30672875	0/0	t0022	2475	2	0	0	2	0	0	copy fasta	DUSP18	chr22	30656445	30672875
DUSP18_chr22_30656445_30672875	0/0	t0023	2484	2	0	0	0	0	2	copy fasta	DUSP18	chr22	30656445	30672875
DUSP18_chr22_30656445_30672875	0/0	t0024	2483	2	2	0	0	0	0	copy fasta	DUSP18	chr22	30656445	30672875
DUSP18_chr22_30656445_30672875	0/0	t0025	2484	2	2	0	0	0	0	copy fasta	DUSP18	chr22	30656445	30672875