JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
DUSP18_chr22_30656445_30672875	0/0	t0026	2486	2	0	0	2	0	0	copy fasta	DUSP18	chr22	30656445	30672875
DUSP18_chr22_30656445_30672875	0/0	t0027	2484	2	0	1	1	0	0	copy fasta	DUSP18	chr22	30656445	30672875
DUSP18_chr22_30656445_30672875	0/0	t0028	2485	2	0	0	1	0	1	copy fasta	DUSP18	chr22	30656445	30672875
DUSP18_chr22_30656445_30672875	0/0	t0029	2485	2	0	0	2	0	0	copy fasta	DUSP18	chr22	30656445	30672875
DUSP18_chr22_30656445_30672875	0/0	t0030	2487	2	0	0	2	0	0	copy fasta	DUSP18	chr22	30656445	30672875
DUSP18_chr22_30656445_30672875	0/0	t0031	2476	2	0	0	2	0	0	copy fasta	DUSP18	chr22	30656445	30672875
DUSP18_chr22_30656445_30672875	0/0	t0032	2474	2	0	0	2	0	0	copy fasta	DUSP18	chr22	30656445	30672875
DUSP18_chr22_30656445_30672875	0/0	t0033	2486	2	0	0	2	0	0	copy fasta	DUSP18	chr22	30656445	30672875
DUSP18_chr22_30656445_30672875	0/0	t0034	2484	2	0	2	0	0	0	copy fasta	DUSP18	chr22	30656445	30672875
DUSP18_chr22_30656445_30672875	0/0	t0035	2474	2	2	0	0	0	0	copy fasta	DUSP18	chr22	30656445	30672875
DUSP18_chr22_30656445_30672875	0/0	t0036	2484	2	2	0	0	0	0	copy fasta	DUSP18	chr22	30656445	30672875
DUSP18_chr22_30656445_30672875	0/0	t0037	2484	1	0	0	1	0	0	copy fasta	DUSP18	chr22	30656445	30672875
DUSP18_chr22_30656445_30672875	0/0	t0038	2487	1	1	0	0	0	0	copy fasta	DUSP18	chr22	30656445	30672875
DUSP18_chr22_30656445_30672875	0/0	t0039	2486	1	0	0	0	1	0	copy fasta	DUSP18	chr22	30656445	30672875
DUSP18_chr22_30656445_30672875	0/0	t0040	2486	1	1	0	0	0	0	copy fasta	DUSP18	chr22	30656445	30672875
DUSP18_chr22_30656445_30672875	0/0	t0041	2485	1	1	0	0	0	0	copy fasta	DUSP18	chr22	30656445	30672875
DUSP18_chr22_30656445_30672875	0/0	t0042	2485	1	1	0	0	0	0	copy fasta	DUSP18	chr22	30656445	30672875
DUSP18_chr22_30656445_30672875	0/0	t0043	2484	1	1	0	0	0	0	copy fasta	DUSP18	chr22	30656445	30672875
DUSP18_chr22_30656445_30672875	0/0	t0044	2475	1	0	0	1	0	0	copy fasta	DUSP18	chr22	30656445	30672875
DUSP18_chr22_30656445_30672875	0/0	t0045	2485	1	0	0	1	0	0	copy fasta	DUSP18	chr22	30656445	30672875
DUSP18_chr22_30656445_30672875	0/0	t0046	2487	1	0	0	0	0	1	copy fasta	DUSP18	chr22	30656445	30672875
DUSP18_chr22_30656445_30672875	0/0	t0047	2487	1	0	0	1	0	0	copy fasta	DUSP18	chr22	30656445	30672875
DUSP18_chr22_30656445_30672875	0/0	t0048	2484	1	0	0	1	0	0	copy fasta	DUSP18	chr22	30656445	30672875
DUSP18_chr22_30656445_30672875	0/0	t0049	2484	1	0	0	0	0	1	copy fasta	DUSP18	chr22	30656445	30672875
DUSP18_chr22_30656445_30672875	0/0	t0050	2485	1	0	0	1	0	0	copy fasta	DUSP18	chr22	30656445	30672875
DUSP18_chr22_30656445_30672875	0/0	t0051	2485	1	0	0	1	0	0	copy fasta	DUSP18	chr22	30656445	30672875
DUSP18_chr22_30656445_30672875	0/0	t0052	2486	1	0	0	1	0	0	copy fasta	DUSP18	chr22	30656445	30672875
DUSP18_chr22_30656445_30672875	0/0	t0053	2486	1	0	0	0	0	1	copy fasta	DUSP18	chr22	30656445	30672875
DUSP18_chr22_30656445_30672875	0/0	t0054	2486	1	0	0	0	0	1	copy fasta	DUSP18	chr22	30656445	30672875
DUSP18_chr22_30656445_30672875	0/0	t0055	2484	1	1	0	0	0	0	copy fasta	DUSP18	chr22	30656445	30672875
DUSP18_chr22_30656445_30672875	0/0	t0056	2484	1	0	1	0	0	0	copy fasta	DUSP18	chr22	30656445	30672875
DUSP18_chr22_30656445_30672875	0/0	t0057	2475	1	0	0	1	0	0	copy fasta	DUSP18	chr22	30656445	30672875
DUSP18_chr22_30656445_30672875	0/0	t0058	2476	1	0	0	1	0	0	copy fasta	DUSP18	chr22	30656445	30672875
DUSP18_chr22_30656445_30672875	0/0	t0059	2486	1	0	0	0	0	1	copy fasta	DUSP18	chr22	30656445	30672875
DUSP18_chr22_30656445_30672875	0/0	t0060	2484	1	1	0	0	0	0	copy fasta	DUSP18	chr22	30656445	30672875
DUSP18_chr22_30656445_30672875	0/0	t0061	2485	1	1	0	0	0	0	copy fasta	DUSP18	chr22	30656445	30672875
DUSP18_chr22_30656445_30672875	0/0	t0062	2485	1	0	0	0	0	1	copy fasta	DUSP18	chr22	30656445	30672875
DUSP18_chr22_30656445_30672875	0/0	t0063	2484	1	1	0	0	0	0	copy fasta	DUSP18	chr22	30656445	30672875
DUSP18_chr22_30656445_30672875	0/0	t0064	2486	1	0	0	1	0	0	copy fasta	DUSP18	chr22	30656445	30672875
DUSP18_chr22_30656445_30672875	0/0	t0065	2485	1	1	0	0	0	0	copy fasta	DUSP18	chr22	30656445	30672875
DUSP18_chr22_30656445_30672875	0/0	t0066	2485	1	0	0	1	0	0	copy fasta	DUSP18	chr22	30656445	30672875
DUSP18_chr22_30656445_30672875	0/0	t0067	2476	1	0	1	0	0	0	copy fasta	DUSP18	chr22	30656445	30672875
DUSP18_chr22_30656445_30672875	0/0	t0068	2474	1	0	1	0	0	0	copy fasta	DUSP18	chr22	30656445	30672875
DUSP18_chr22_30656445_30672875	0/0	t0069	2486	1	0	1	0	0	0	copy fasta	DUSP18	chr22	30656445	30672875
DUSP18_chr22_30656445_30672875	0/0	t0070	2475	1	0	0	1	0	0	copy fasta	DUSP18	chr22	30656445	30672875
DUSP18_chr22_30656445_30672875	0/0	t0071	2484	1	0	0	0	0	1	copy fasta	DUSP18	chr22	30656445	30672875
DUSP18_chr22_30656445_30672875	0/0	t0072	2486	1	0	0	1	0	0	copy fasta	DUSP18	chr22	30656445	30672875
DUSP18_chr22_30656445_30672875	0/0	t0073	2484	1	1	0	0	0	0	copy fasta	DUSP18	chr22	30656445	30672875
DUSP18_chr22_30656445_30672875	0/0	t0074	2483	1	0	1	0	0	0	copy fasta	DUSP18	chr22	30656445	30672875
DUSP18_chr22_30656445_30672875	0/0	t0075	2483	1	1	0	0	0	0	copy fasta	DUSP18	chr22	30656445	30672875