JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
DUSP18_chr22_30656445_30672875	0/0	t0076	2484	1	1	0	0	0	0	copy fasta	DUSP18	chr22	30656445	30672875
DUSP18_chr22_30656445_30672875	0/0	t0077	2483	1	0	0	0	0	1	copy fasta	DUSP18	chr22	30656445	30672875
DUSP18_chr22_30656445_30672875	0/0	t0078	2483	1	0	1	0	0	0	copy fasta	DUSP18	chr22	30656445	30672875
DUSP18_chr22_30656445_30672875	0/0	t0079	2473	1	1	0	0	0	0	copy fasta	DUSP18	chr22	30656445	30672875
DUSP18_chr22_30656445_30672875	0/0	t0080	2483	1	1	0	0	0	0	copy fasta	DUSP18	chr22	30656445	30672875
DUSP18_chr22_30656445_30672875	0/0	t0081	2485	1	1	0	0	0	0	copy fasta	DUSP18	chr22	30656445	30672875
DUSP18_chr22_30656445_30672875	0/0	t0082	2483	1	1	0	0	0	0	copy fasta	DUSP18	chr22	30656445	30672875
DUSP18_chr22_30656445_30672875	0/0	t0083	2483	1	1	0	0	0	0	copy fasta	DUSP18	chr22	30656445	30672875
DUSP18_chr22_30656445_30672875	0/0	t0084	2482	1	1	0	0	0	0	copy fasta	DUSP18	chr22	30656445	30672875
DUSP19_chr2_183073747_183105008	0/1	t0001	4537	155	11	23	89	11	20	copy fasta	DUSP19	chr2	183073747	183105008
DUSP19_chr2_183073747_183105008	0/0	t0002	4539	36	4	4	22	0	6	copy fasta	DUSP19	chr2	183073747	183105008
DUSP19_chr2_183073747_183105008	0/0	t0003	4539	26	15	3	4	0	4	copy fasta	DUSP19	chr2	183073747	183105008
DUSP19_chr2_183073747_183105008	0/0	t0004	4538	22	7	6	1	4	4	copy fasta	DUSP19	chr2	183073747	183105008
DUSP19_chr2_183073747_183105008	0/0	t0005	4536	20	0	11	8	0	1	copy fasta	DUSP19	chr2	183073747	183105008
DUSP19_chr2_183073747_183105008	0/0	t0006	4540	13	13	0	0	0	0	copy fasta	DUSP19	chr2	183073747	183105008
DUSP19_chr2_183073747_183105008	0/0	t0007	4539	7	7	0	0	0	0	copy fasta	DUSP19	chr2	183073747	183105008
DUSP19_chr2_183073747_183105008	0/0	t0008	4539	6	5	1	0	0	0	copy fasta	DUSP19	chr2	183073747	183105008
DUSP19_chr2_183073747_183105008	0/0	t0009	4538	3	0	2	0	0	1	copy fasta	DUSP19	chr2	183073747	183105008
DUSP19_chr2_183073747_183105008	0/0	t0010	4538	3	0	3	0	0	0	copy fasta	DUSP19	chr2	183073747	183105008
DUSP19_chr2_183073747_183105008	0/0	t0011	4540	3	3	0	0	0	0	copy fasta	DUSP19	chr2	183073747	183105008
DUSP19_chr2_183073747_183105008	0/0	t0012	4537	2	0	0	2	0	0	copy fasta	DUSP19	chr2	183073747	183105008
DUSP19_chr2_183073747_183105008	0/0	t0013	4538	2	1	1	0	0	0	copy fasta	DUSP19	chr2	183073747	183105008
DUSP19_chr2_183073747_183105008	0/0	t0014	4539	2	0	0	0	0	2	copy fasta	DUSP19	chr2	183073747	183105008
DUSP19_chr2_183073747_183105008	0/0	t0015	4539	2	2	0	0	0	0	copy fasta	DUSP19	chr2	183073747	183105008
DUSP19_chr2_183073747_183105008	0/0	t0016	4538	2	2	0	0	0	0	copy fasta	DUSP19	chr2	183073747	183105008
DUSP19_chr2_183073747_183105008	0/0	t0017	4539	1	0	1	0	0	0	copy fasta	DUSP19	chr2	183073747	183105008
DUSP19_chr2_183073747_183105008	0/0	t0018	4537	1	0	0	0	0	1	copy fasta	DUSP19	chr2	183073747	183105008
DUSP19_chr2_183073747_183105008	0/0	t0019	4536	1	0	0	1	0	0	copy fasta	DUSP19	chr2	183073747	183105008
DUSP19_chr2_183073747_183105008	0/0	t0020	4537	1	0	0	1	0	0	copy fasta	DUSP19	chr2	183073747	183105008
DUSP19_chr2_183073747_183105008	0/0	t0021	4537	1	1	0	0	0	0	copy fasta	DUSP19	chr2	183073747	183105008
DUSP19_chr2_183073747_183105008	0/0	t0022	4537	1	0	0	1	0	0	copy fasta	DUSP19	chr2	183073747	183105008
DUSP19_chr2_183073747_183105008	0/0	t0023	4537	1	0	0	1	0	0	copy fasta	DUSP19	chr2	183073747	183105008
DUSP19_chr2_183073747_183105008	0/0	t0024	4537	1	0	0	1	0	0	copy fasta	DUSP19	chr2	183073747	183105008
DUSP19_chr2_183073747_183105008	0/0	t0025	4537	1	0	0	1	0	0	copy fasta	DUSP19	chr2	183073747	183105008
DUSP19_chr2_183073747_183105008	0/0	t0026	4539	1	1	0	0	0	0	copy fasta	DUSP19	chr2	183073747	183105008
DUSP19_chr2_183073747_183105008	0/0	t0027	4538	1	1	0	0	0	0	copy fasta	DUSP19	chr2	183073747	183105008
DUSP19_chr2_183073747_183105008	0/0	t0028	4538	1	1	0	0	0	0	copy fasta	DUSP19	chr2	183073747	183105008
DUSP19_chr2_183073747_183105008	1/0	t0029	4538	1	0	0	0	0	0	copy fasta	DUSP19	chr2	183073747	183105008
DUSP19_chr2_183073747_183105008	0/0	t0030	4538	1	1	0	0	0	0	copy fasta	DUSP19	chr2	183073747	183105008
DUSP19_chr2_183073747_183105008	0/0	t0031	4537	1	1	0	0	0	0	copy fasta	DUSP19	chr2	183073747	183105008
DUSP19_chr2_183073747_183105008	0/0	t0032	4538	1	1	0	0	0	0	copy fasta	DUSP19	chr2	183073747	183105008
DUSP19_chr2_183073747_183105008	0/0	t0033	4538	1	0	0	0	0	1	copy fasta	DUSP19	chr2	183073747	183105008
DUSP19_chr2_183073747_183105008	0/0	t0034	4539	1	1	0	0	0	0	copy fasta	DUSP19	chr2	183073747	183105008
DUSP19_chr2_183073747_183105008	0/0	t0035	4539	1	1	0	0	0	0	copy fasta	DUSP19	chr2	183073747	183105008
DUSP19_chr2_183073747_183105008	0/0	t0036	4540	1	1	0	0	0	0	copy fasta	DUSP19	chr2	183073747	183105008
DUSP19_chr2_183073747_183105008	0/0	t0037	4537	1	1	0	0	0	0	copy fasta	DUSP19	chr2	183073747	183105008
DUSP19_chr2_183073747_183105008	0/0	t0038	4539	1	0	1	0	0	0	copy fasta	DUSP19	chr2	183073747	183105008
DUSP19_chr2_183073747_183105008	0/0	t0039	4539	1	0	0	0	1	0	copy fasta	DUSP19	chr2	183073747	183105008
DUSP19_chr2_183073747_183105008	0/0	t0040	4861	1	1	0	0	0	0	copy fasta	DUSP19	chr2	183073747	183105008
DUSP1_chr5_172763096_172776195	1/1	t0001	910	440	80	81	215	17	45	copy fasta	DUSP1	chr5	172763096	172776195