JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
DUSP1_chr5_172763096_172776195	0/0	t0002	911	13	12	1	0	0	0	copy fasta	DUSP1	chr5	172763096	172776195
DUSP1_chr5_172763096_172776195	0/0	t0003	910	3	0	0	3	0	0	copy fasta	DUSP1	chr5	172763096	172776195
DUSP1_chr5_172763096_172776195	0/0	t0004	910	2	1	1	0	0	0	copy fasta	DUSP1	chr5	172763096	172776195
DUSP1_chr5_172763096_172776195	0/0	t0005	910	1	1	0	0	0	0	copy fasta	DUSP1	chr5	172763096	172776195
DUSP1_chr5_172763096_172776195	0/0	t0006	910	1	0	0	0	0	1	copy fasta	DUSP1	chr5	172763096	172776195
DUSP1_chr5_172763096_172776195	0/0	t0007	930	1	0	0	0	1	0	copy fasta	DUSP1	chr5	172763096	172776195
DUSP1_chr5_172763096_172776195	0/0	t0008	911	1	0	1	0	0	0	copy fasta	DUSP1	chr5	172763096	172776195
DUSP21_chrX_44839021_44849888	1/1	t0001	296	277	78	41	117	9	30	copy fasta	DUSP21	chrX	44839021	44849888
DUSP21_chrX_44839021_44849888	0/0	t0002	296	6	4	2	0	0	0	copy fasta	DUSP21	chrX	44839021	44849888
DUSP21_chrX_44839021_44849888	0/0	t0003	296	2	0	0	2	0	0	copy fasta	DUSP21	chrX	44839021	44849888
DUSP22_chr6_287487_356355	0/0	t0001	2458	76	9	14	47	2	4	copy fasta	DUSP22	chr6	287487	356355
DUSP22_chr6_287487_356355	0/0	t0002	2459	50	7	8	30	0	5	copy fasta	DUSP22	chr6	287487	356355
DUSP22_chr6_287487_356355	0/0	t0003	2458	45	3	21	18	2	1	copy fasta	DUSP22	chr6	287487	356355
DUSP22_chr6_287487_356355	0/0	t0004	2458	26	2	5	17	0	2	copy fasta	DUSP22	chr6	287487	356355
DUSP22_chr6_287487_356355	0/0	t0005	2458	5	1	1	3	0	0	copy fasta	DUSP22	chr6	287487	356355
DUSP22_chr6_287487_356355	0/0	t0006	2458	3	3	0	0	0	0	copy fasta	DUSP22	chr6	287487	356355
DUSP22_chr6_287487_356355	0/0	t0007	2458	3	3	0	0	0	0	copy fasta	DUSP22	chr6	287487	356355
DUSP22_chr6_287487_356355	0/0	t0008	2458	3	3	0	0	0	0	copy fasta	DUSP22	chr6	287487	356355
DUSP22_chr6_287487_356355	0/0	t0009	2459	2	1	1	0	0	0	copy fasta	DUSP22	chr6	287487	356355
DUSP22_chr6_287487_356355	0/0	t0010	2458	2	0	0	0	2	0	copy fasta	DUSP22	chr6	287487	356355
DUSP22_chr6_287487_356355	0/0	t0011	2458	2	2	0	0	0	0	copy fasta	DUSP22	chr6	287487	356355
DUSP22_chr6_287487_356355	0/0	t0012	2458	1	1	0	0	0	0	copy fasta	DUSP22	chr6	287487	356355
DUSP22_chr6_287487_356355	0/0	t0013	2458	1	1	0	0	0	0	copy fasta	DUSP22	chr6	287487	356355
DUSP22_chr6_287487_356355	0/0	t0014	2458	1	0	0	1	0	0	copy fasta	DUSP22	chr6	287487	356355
DUSP22_chr6_287487_356355	1/0	t0015	2458	1	0	0	0	0	0	copy fasta	DUSP22	chr6	287487	356355
DUSP23_chr1_159775962_159787543	1/1	t0001	345	419	92	75	197	12	41	copy fasta	DUSP23	chr1	159775962	159787543
DUSP23_chr1_159775962_159787543	0/0	t0002	345	63	8	7	37	4	7	copy fasta	DUSP23	chr1	159775962	159787543
DUSP26_chr8_33586330_33605023	1/1	t0001	1119	223	74	39	68	10	30	copy fasta	DUSP26	chr8	33586330	33605023
DUSP26_chr8_33586330_33605023	0/0	t0002	1119	155	6	35	97	6	11	copy fasta	DUSP26	chr8	33586330	33605023
DUSP26_chr8_33586330_33605023	0/0	t0003	1119	9	7	2	0	0	0	copy fasta	DUSP26	chr8	33586330	33605023
DUSP26_chr8_33586330_33605023	0/0	t0004	1119	9	0	0	9	0	0	copy fasta	DUSP26	chr8	33586330	33605023
DUSP26_chr8_33586330_33605023	0/0	t0005	1119	7	7	0	0	0	0	copy fasta	DUSP26	chr8	33586330	33605023
DUSP26_chr8_33586330_33605023	0/0	t0006	1119	4	0	0	4	0	0	copy fasta	DUSP26	chr8	33586330	33605023
DUSP26_chr8_33586330_33605023	0/0	t0007	1119	3	0	0	0	0	3	copy fasta	DUSP26	chr8	33586330	33605023
DUSP26_chr8_33586330_33605023	0/0	t0008	1119	2	2	0	0	0	0	copy fasta	DUSP26	chr8	33586330	33605023
DUSP26_chr8_33586330_33605023	0/0	t0009	1119	1	0	0	1	0	0	copy fasta	DUSP26	chr8	33586330	33605023
DUSP26_chr8_33586330_33605023	0/0	t0010	1119	1	1	0	0	0	0	copy fasta	DUSP26	chr8	33586330	33605023
DUSP26_chr8_33586330_33605023	0/0	t0011	1119	1	0	0	1	0	0	copy fasta	DUSP26	chr8	33586330	33605023
DUSP26_chr8_33586330_33605023	0/0	t0012	1119	1	0	0	1	0	0	copy fasta	DUSP26	chr8	33586330	33605023
DUSP26_chr8_33586330_33605023	0/0	t0013	1096	1	0	1	0	0	0	copy fasta	DUSP26	chr8	33586330	33605023
DUSP26_chr8_33586330_33605023	0/0	t0014	1119	1	0	0	1	0	0	copy fasta	DUSP26	chr8	33586330	33605023
DUSP26_chr8_33586330_33605023	0/0	t0015	1119	1	0	1	0	0	0	copy fasta	DUSP26	chr8	33586330	33605023
DUSP26_chr8_33586330_33605023	0/0	t0016	1119	1	1	0	0	0	0	copy fasta	DUSP26	chr8	33586330	33605023
DUSP28_chr2_240555357_240570256	0/1	t0001	4118	196	7	38	122	7	21	copy fasta	DUSP28	chr2	240555357	240570256
DUSP28_chr2_240555357_240570256	1/0	t0002	4118	55	29	11	3	4	7	copy fasta	DUSP28	chr2	240555357	240570256
DUSP28_chr2_240555357_240570256	0/0	t0003	4118	28	8	9	3	5	3	copy fasta	DUSP28	chr2	240555357	240570256
DUSP28_chr2_240555357_240570256	0/0	t0004	4119	15	13	2	0	0	0	copy fasta	DUSP28	chr2	240555357	240570256
DUSP28_chr2_240555357_240570256	0/0	t0005	4118	12	0	4	2	0	6	copy fasta	DUSP28	chr2	240555357	240570256
DUSP28_chr2_240555357_240570256	0/0	t0006	4118	9	9	0	0	0	0	copy fasta	DUSP28	chr2	240555357	240570256
DUSP28_chr2_240555357_240570256	0/0	t0007	4116	8	0	0	8	0	0	copy fasta	DUSP28	chr2	240555357	240570256