JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
DUSP28_chr2_240555357_240570256	0/0	t0008	4118	8	0	1	4	0	3	copy fasta	DUSP28	chr2	240555357	240570256
DUSP28_chr2_240555357_240570256	0/0	t0009	4024	8	0	0	8	0	0	copy fasta	DUSP28	chr2	240555357	240570256
DUSP28_chr2_240555357_240570256	0/0	t0010	4118	8	0	5	3	0	0	copy fasta	DUSP28	chr2	240555357	240570256
DUSP28_chr2_240555357_240570256	0/0	t0011	4118	7	7	0	0	0	0	copy fasta	DUSP28	chr2	240555357	240570256
DUSP28_chr2_240555357_240570256	0/0	t0012	4119	6	5	1	0	0	0	copy fasta	DUSP28	chr2	240555357	240570256
DUSP28_chr2_240555357_240570256	0/0	t0013	4119	6	0	0	6	0	0	copy fasta	DUSP28	chr2	240555357	240570256
DUSP28_chr2_240555357_240570256	0/0	t0014	4118	6	1	5	0	0	0	copy fasta	DUSP28	chr2	240555357	240570256
DUSP28_chr2_240555357_240570256	0/0	t0015	4118	5	3	2	0	0	0	copy fasta	DUSP28	chr2	240555357	240570256
DUSP28_chr2_240555357_240570256	0/0	t0016	4118	5	0	1	0	0	4	copy fasta	DUSP28	chr2	240555357	240570256
DUSP28_chr2_240555357_240570256	0/0	t0017	4119	3	0	0	3	0	0	copy fasta	DUSP28	chr2	240555357	240570256
DUSP28_chr2_240555357_240570256	0/0	t0018	4118	3	3	0	0	0	0	copy fasta	DUSP28	chr2	240555357	240570256
DUSP28_chr2_240555357_240570256	0/0	t0019	4116	2	0	0	2	0	0	copy fasta	DUSP28	chr2	240555357	240570256
DUSP28_chr2_240555357_240570256	0/0	t0020	4118	2	0	0	2	0	0	copy fasta	DUSP28	chr2	240555357	240570256
DUSP28_chr2_240555357_240570256	0/0	t0021	4118	2	2	0	0	0	0	copy fasta	DUSP28	chr2	240555357	240570256
DUSP28_chr2_240555357_240570256	0/0	t0022	4118	2	2	0	0	0	0	copy fasta	DUSP28	chr2	240555357	240570256
DUSP28_chr2_240555357_240570256	0/0	t0023	4118	2	0	0	2	0	0	copy fasta	DUSP28	chr2	240555357	240570256
DUSP28_chr2_240555357_240570256	0/0	t0024	4118	2	2	0	0	0	0	copy fasta	DUSP28	chr2	240555357	240570256
DUSP28_chr2_240555357_240570256	0/0	t0025	4118	1	0	0	1	0	0	copy fasta	DUSP28	chr2	240555357	240570256
DUSP28_chr2_240555357_240570256	0/0	t0026	4118	1	1	0	0	0	0	copy fasta	DUSP28	chr2	240555357	240570256
DUSP28_chr2_240555357_240570256	0/0	t0027	4118	1	0	0	1	0	0	copy fasta	DUSP28	chr2	240555357	240570256
DUSP28_chr2_240555357_240570256	0/0	t0028	4119	1	0	0	1	0	0	copy fasta	DUSP28	chr2	240555357	240570256
DUSP28_chr2_240555357_240570256	0/0	t0029	4118	1	0	0	0	0	1	copy fasta	DUSP28	chr2	240555357	240570256
DUSP28_chr2_240555357_240570256	0/0	t0030	4118	1	1	0	0	0	0	copy fasta	DUSP28	chr2	240555357	240570256
DUSP28_chr2_240555357_240570256	0/0	t0031	4118	1	1	0	0	0	0	copy fasta	DUSP28	chr2	240555357	240570256
DUSP28_chr2_240555357_240570256	0/0	t0032	4118	1	1	0	0	0	0	copy fasta	DUSP28	chr2	240555357	240570256
DUSP28_chr2_240555357_240570256	0/0	t0033	4118	1	1	0	0	0	0	copy fasta	DUSP28	chr2	240555357	240570256
DUSP28_chr2_240555357_240570256	0/0	t0034	4118	1	0	0	0	0	1	copy fasta	DUSP28	chr2	240555357	240570256
DUSP28_chr2_240555357_240570256	0/0	t0035	4118	1	0	0	1	0	0	copy fasta	DUSP28	chr2	240555357	240570256
DUSP28_chr2_240555357_240570256	0/0	t0036	4024	1	0	0	1	0	0	copy fasta	DUSP28	chr2	240555357	240570256
DUSP28_chr2_240555357_240570256	0/0	t0037	4118	1	0	0	1	0	0	copy fasta	DUSP28	chr2	240555357	240570256
DUSP28_chr2_240555357_240570256	0/0	t0038	4118	1	0	0	1	0	0	copy fasta	DUSP28	chr2	240555357	240570256
DUSP28_chr2_240555357_240570256	0/0	t0039	4118	1	0	1	0	0	0	copy fasta	DUSP28	chr2	240555357	240570256
DUSP28_chr2_240555357_240570256	0/0	t0040	4118	1	1	0	0	0	0	copy fasta	DUSP28	chr2	240555357	240570256
DUSP28_chr2_240555357_240570256	0/0	t0041	4118	1	0	0	1	0	0	copy fasta	DUSP28	chr2	240555357	240570256
DUSP28_chr2_240555357_240570256	0/0	t0042	4118	1	0	1	0	0	0	copy fasta	DUSP28	chr2	240555357	240570256
DUSP28_chr2_240555357_240570256	0/0	t0043	4118	1	1	0	0	0	0	copy fasta	DUSP28	chr2	240555357	240570256
DUSP28_chr2_240555357_240570256	0/0	t0044	4118	1	0	1	0	0	0	copy fasta	DUSP28	chr2	240555357	240570256
DUSP28_chr2_240555357_240570256	0/0	t0045	4118	1	0	0	0	0	1	copy fasta	DUSP28	chr2	240555357	240570256
DUSP28_chr2_240555357_240570256	0/0	t0046	4118	1	0	0	0	0	1	copy fasta	DUSP28	chr2	240555357	240570256
DUSP29_chr10_75032472_75078642	1/1	t0001	473	361	92	62	155	15	35	copy fasta	DUSP29	chr10	75032472	75078642
DUSP29_chr10_75032472_75078642	0/0	t0002	473	2	1	1	0	0	0	copy fasta	DUSP29	chr10	75032472	75078642
DUSP29_chr10_75032472_75078642	0/0	t0003	473	1	0	0	0	1	0	copy fasta	DUSP29	chr10	75032472	75078642
DUSP29_chr10_75032472_75078642	0/0	t0004	473	1	0	0	1	0	0	copy fasta	DUSP29	chr10	75032472	75078642
DUSP29_chr10_75032472_75078642	0/0	t0005	473	1	0	1	0	0	0	copy fasta	DUSP29	chr10	75032472	75078642
DUSP29_chr10_75032472_75078642	0/0	t0006	473	1	1	0	0	0	0	copy fasta	DUSP29	chr10	75032472	75078642
DUSP29_chr10_75032472_75078642	0/0	t0007	473	1	0	0	0	0	1	copy fasta	DUSP29	chr10	75032472	75078642
DUSP2_chr2_96138169_96150440	0/0	t0001	741	245	33	53	131	4	24	copy fasta	DUSP2	chr2	96138169	96150440
DUSP2_chr2_96138169_96150440	1/1	t0002	741	171	59	24	61	5	20	copy fasta	DUSP2	chr2	96138169	96150440
DUSP2_chr2_96138169_96150440	0/0	t0003	741	3	0	0	0	3	0	copy fasta	DUSP2	chr2	96138169	96150440
DUSP2_chr2_96138169_96150440	0/0	t0004	741	1	1	0	0	0	0	copy fasta	DUSP2	chr2	96138169	96150440