JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
DUSP2_chr2_96138169_96150440	0/0	t0005	741	1	0	1	0	0	0	copy fasta	DUSP2	chr2	96138169	96150440
DUSP2_chr2_96138169_96150440	0/0	t0006	741	1	1	0	0	0	0	copy fasta	DUSP2	chr2	96138169	96150440
DUSP3_chr17_43761125_43783977	0/1	t0001	3538	209	34	49	100	5	20	copy fasta	DUSP3	chr17	43761125	43783977
DUSP3_chr17_43761125_43783977	0/0	t0002	3538	38	2	3	26	0	7	copy fasta	DUSP3	chr17	43761125	43783977
DUSP3_chr17_43761125_43783977	0/0	t0003	3537	24	1	13	0	4	6	copy fasta	DUSP3	chr17	43761125	43783977
DUSP3_chr17_43761125_43783977	0/0	t0004	3537	14	14	0	0	0	0	copy fasta	DUSP3	chr17	43761125	43783977
DUSP3_chr17_43761125_43783977	0/0	t0005	3537	9	1	3	2	2	1	copy fasta	DUSP3	chr17	43761125	43783977
DUSP3_chr17_43761125_43783977	0/0	t0006	3538	7	7	0	0	0	0	copy fasta	DUSP3	chr17	43761125	43783977
DUSP3_chr17_43761125_43783977	1/0	t0007	3538	6	0	4	0	1	0	copy fasta	DUSP3	chr17	43761125	43783977
DUSP3_chr17_43761125_43783977	0/0	t0008	3537	6	6	0	0	0	0	copy fasta	DUSP3	chr17	43761125	43783977
DUSP3_chr17_43761125_43783977	0/0	t0009	3533	5	5	0	0	0	0	copy fasta	DUSP3	chr17	43761125	43783977
DUSP3_chr17_43761125_43783977	0/0	t0010	3538	5	4	1	0	0	0	copy fasta	DUSP3	chr17	43761125	43783977
DUSP3_chr17_43761125_43783977	0/0	t0011	3538	4	0	0	4	0	0	copy fasta	DUSP3	chr17	43761125	43783977
DUSP3_chr17_43761125_43783977	0/0	t0012	3538	3	1	2	0	0	0	copy fasta	DUSP3	chr17	43761125	43783977
DUSP3_chr17_43761125_43783977	0/0	t0013	3538	3	0	1	0	0	2	copy fasta	DUSP3	chr17	43761125	43783977
DUSP3_chr17_43761125_43783977	0/0	t0014	3538	3	3	0	0	0	0	copy fasta	DUSP3	chr17	43761125	43783977
DUSP3_chr17_43761125_43783977	0/0	t0015	3538	2	0	0	1	0	1	copy fasta	DUSP3	chr17	43761125	43783977
DUSP3_chr17_43761125_43783977	0/0	t0016	3538	2	2	0	0	0	0	copy fasta	DUSP3	chr17	43761125	43783977
DUSP3_chr17_43761125_43783977	0/0	t0017	3538	2	1	1	0	0	0	copy fasta	DUSP3	chr17	43761125	43783977
DUSP3_chr17_43761125_43783977	0/0	t0018	3538	2	1	1	0	0	0	copy fasta	DUSP3	chr17	43761125	43783977
DUSP3_chr17_43761125_43783977	0/0	t0019	3538	2	0	1	0	0	1	copy fasta	DUSP3	chr17	43761125	43783977
DUSP3_chr17_43761125_43783977	0/0	t0020	3537	1	1	0	0	0	0	copy fasta	DUSP3	chr17	43761125	43783977
DUSP3_chr17_43761125_43783977	0/0	t0021	3538	1	1	0	0	0	0	copy fasta	DUSP3	chr17	43761125	43783977
DUSP3_chr17_43761125_43783977	0/0	t0022	3538	1	1	0	0	0	0	copy fasta	DUSP3	chr17	43761125	43783977
DUSP3_chr17_43761125_43783977	0/0	t0023	3538	1	1	0	0	0	0	copy fasta	DUSP3	chr17	43761125	43783977
DUSP3_chr17_43761125_43783977	0/0	t0024	3537	1	1	0	0	0	0	copy fasta	DUSP3	chr17	43761125	43783977
DUSP3_chr17_43761125_43783977	0/0	t0025	3538	1	0	0	1	0	0	copy fasta	DUSP3	chr17	43761125	43783977
DUSP3_chr17_43761125_43783977	0/0	t0026	3538	1	1	0	0	0	0	copy fasta	DUSP3	chr17	43761125	43783977
DUSP3_chr17_43761125_43783977	0/0	t0027	3538	1	0	0	0	0	1	copy fasta	DUSP3	chr17	43761125	43783977
DUSP3_chr17_43761125_43783977	0/0	t0028	3538	1	0	1	0	0	0	copy fasta	DUSP3	chr17	43761125	43783977
DUSP3_chr17_43761125_43783977	0/0	t0029	3538	1	0	0	1	0	0	copy fasta	DUSP3	chr17	43761125	43783977
DUSP3_chr17_43761125_43783977	0/0	t0030	3538	1	0	0	1	0	0	copy fasta	DUSP3	chr17	43761125	43783977
DUSP3_chr17_43761125_43783977	0/0	t0031	3538	1	0	0	1	0	0	copy fasta	DUSP3	chr17	43761125	43783977
DUSP3_chr17_43761125_43783977	0/0	t0032	3538	1	0	0	1	0	0	copy fasta	DUSP3	chr17	43761125	43783977
DUSP3_chr17_43761125_43783977	0/0	t0033	3538	1	1	0	0	0	0	copy fasta	DUSP3	chr17	43761125	43783977
DUSP3_chr17_43761125_43783977	0/0	t0034	3538	1	1	0	0	0	0	copy fasta	DUSP3	chr17	43761125	43783977
DUSP3_chr17_43761125_43783977	0/0	t0035	3538	1	0	0	1	0	0	copy fasta	DUSP3	chr17	43761125	43783977
DUSP3_chr17_43761125_43783977	0/0	t0036	3538	1	0	0	0	0	1	copy fasta	DUSP3	chr17	43761125	43783977
DUSP3_chr17_43761125_43783977	0/0	t0037	3538	1	0	0	1	0	0	copy fasta	DUSP3	chr17	43761125	43783977
DUSP4_chr8_29328064_29355684	1/1	t0001	4369	186	45	41	65	8	25	copy fasta	DUSP4	chr8	29328064	29355684
DUSP4_chr8_29328064_29355684	0/0	t0002	4369	121	3	30	74	2	12	copy fasta	DUSP4	chr8	29328064	29355684
DUSP4_chr8_29328064_29355684	0/0	t0003	4369	19	19	0	0	0	0	copy fasta	DUSP4	chr8	29328064	29355684
DUSP4_chr8_29328064_29355684	0/0	t0004	4369	4	0	0	4	0	0	copy fasta	DUSP4	chr8	29328064	29355684
DUSP4_chr8_29328064_29355684	0/0	t0005	4370	4	3	0	0	0	1	copy fasta	DUSP4	chr8	29328064	29355684
DUSP4_chr8_29328064_29355684	0/0	t0006	4369	4	4	0	0	0	0	copy fasta	DUSP4	chr8	29328064	29355684
DUSP4_chr8_29328064_29355684	0/0	t0007	4369	4	2	1	0	1	0	copy fasta	DUSP4	chr8	29328064	29355684
DUSP4_chr8_29328064_29355684	0/0	t0008	4368	3	1	0	2	0	0	copy fasta	DUSP4	chr8	29328064	29355684
DUSP4_chr8_29328064_29355684	0/0	t0009	4365	2	2	0	0	0	0	copy fasta	DUSP4	chr8	29328064	29355684
DUSP4_chr8_29328064_29355684	0/0	t0010	4368	2	0	0	2	0	0	copy fasta	DUSP4	chr8	29328064	29355684
DUSP4_chr8_29328064_29355684	0/0	t0011	4369	2	1	0	0	1	0	copy fasta	DUSP4	chr8	29328064	29355684