JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
DUSP4_chr8_29328064_29355684	0/0	t0012	4369	2	2	0	0	0	0	copy fasta	DUSP4	chr8	29328064	29355684
DUSP4_chr8_29328064_29355684	0/0	t0013	4370	2	2	0	0	0	0	copy fasta	DUSP4	chr8	29328064	29355684
DUSP4_chr8_29328064_29355684	0/0	t0014	4369	2	0	2	0	0	0	copy fasta	DUSP4	chr8	29328064	29355684
DUSP4_chr8_29328064_29355684	0/0	t0015	4369	2	0	0	2	0	0	copy fasta	DUSP4	chr8	29328064	29355684
DUSP4_chr8_29328064_29355684	0/0	t0016	4369	2	2	0	0	0	0	copy fasta	DUSP4	chr8	29328064	29355684
DUSP4_chr8_29328064_29355684	0/0	t0017	4365	2	2	0	0	0	0	copy fasta	DUSP4	chr8	29328064	29355684
DUSP4_chr8_29328064_29355684	0/0	t0018	4369	2	2	0	0	0	0	copy fasta	DUSP4	chr8	29328064	29355684
DUSP4_chr8_29328064_29355684	0/0	t0019	4369	2	1	1	0	0	0	copy fasta	DUSP4	chr8	29328064	29355684
DUSP4_chr8_29328064_29355684	0/0	t0020	4369	1	1	0	0	0	0	copy fasta	DUSP4	chr8	29328064	29355684
DUSP4_chr8_29328064_29355684	0/0	t0021	4370	1	1	0	0	0	0	copy fasta	DUSP4	chr8	29328064	29355684
DUSP4_chr8_29328064_29355684	0/0	t0022	4369	1	0	0	1	0	0	copy fasta	DUSP4	chr8	29328064	29355684
DUSP4_chr8_29328064_29355684	0/0	t0023	4369	1	0	0	1	0	0	copy fasta	DUSP4	chr8	29328064	29355684
DUSP4_chr8_29328064_29355684	0/0	t0024	4369	1	0	0	1	0	0	copy fasta	DUSP4	chr8	29328064	29355684
DUSP4_chr8_29328064_29355684	0/0	t0025	4369	1	0	0	1	0	0	copy fasta	DUSP4	chr8	29328064	29355684
DUSP4_chr8_29328064_29355684	0/0	t0026	4369	1	0	0	1	0	0	copy fasta	DUSP4	chr8	29328064	29355684
DUSP4_chr8_29328064_29355684	0/0	t0027	4369	1	0	0	1	0	0	copy fasta	DUSP4	chr8	29328064	29355684
DUSP4_chr8_29328064_29355684	0/0	t0028	4369	1	0	0	1	0	0	copy fasta	DUSP4	chr8	29328064	29355684
DUSP4_chr8_29328064_29355684	0/0	t0029	4369	1	0	0	1	0	0	copy fasta	DUSP4	chr8	29328064	29355684
DUSP4_chr8_29328064_29355684	0/0	t0030	4369	1	1	0	0	0	0	copy fasta	DUSP4	chr8	29328064	29355684
DUSP4_chr8_29328064_29355684	0/0	t0031	4369	1	1	0	0	0	0	copy fasta	DUSP4	chr8	29328064	29355684
DUSP4_chr8_29328064_29355684	0/0	t0032	4369	1	0	0	0	0	1	copy fasta	DUSP4	chr8	29328064	29355684
DUSP4_chr8_29328064_29355684	0/0	t0033	4369	1	0	1	0	0	0	copy fasta	DUSP4	chr8	29328064	29355684
DUSP4_chr8_29328064_29355684	0/0	t0034	4369	1	0	0	1	0	0	copy fasta	DUSP4	chr8	29328064	29355684
DUSP4_chr8_29328064_29355684	0/0	t0035	4369	1	0	0	1	0	0	copy fasta	DUSP4	chr8	29328064	29355684
DUSP4_chr8_29328064_29355684	0/0	t0036	4369	1	1	0	0	0	0	copy fasta	DUSP4	chr8	29328064	29355684
DUSP4_chr8_29328064_29355684	0/0	t0037	4368	1	0	1	0	0	0	copy fasta	DUSP4	chr8	29328064	29355684
DUSP4_chr8_29328064_29355684	0/0	t0038	4369	1	1	0	0	0	0	copy fasta	DUSP4	chr8	29328064	29355684
DUSP4_chr8_29328064_29355684	0/0	t0039	4369	1	1	0	0	0	0	copy fasta	DUSP4	chr8	29328064	29355684
DUSP4_chr8_29328064_29355684	0/0	t0040	4369	1	1	0	0	0	0	copy fasta	DUSP4	chr8	29328064	29355684
DUSP4_chr8_29328064_29355684	0/0	t0041	4369	1	0	1	0	0	0	copy fasta	DUSP4	chr8	29328064	29355684
DUSP4_chr8_29328064_29355684	0/0	t0042	4369	1	0	0	1	0	0	copy fasta	DUSP4	chr8	29328064	29355684
DUSP4_chr8_29328064_29355684	0/0	t0043	4369	1	1	0	0	0	0	copy fasta	DUSP4	chr8	29328064	29355684
DUSP4_chr8_29328064_29355684	0/0	t0044	4369	1	0	0	0	0	1	copy fasta	DUSP4	chr8	29328064	29355684
DUSP5_chr10_110492907_110516533	0/1	t0001	1323	167	42	33	58	10	23	copy fasta	DUSP5	chr10	110492907	110516533
DUSP5_chr10_110492907_110516533	0/0	t0002	1323	76	2	9	57	0	8	copy fasta	DUSP5	chr10	110492907	110516533
DUSP5_chr10_110492907_110516533	0/0	t0003	1323	65	17	8	37	0	3	copy fasta	DUSP5	chr10	110492907	110516533
DUSP5_chr10_110492907_110516533	0/0	t0004	1320	29	4	4	20	0	1	copy fasta	DUSP5	chr10	110492907	110516533
DUSP5_chr10_110492907_110516533	1/0	t0005	1323	24	9	5	9	0	0	copy fasta	DUSP5	chr10	110492907	110516533
DUSP5_chr10_110492907_110516533	0/0	t0006	1323	11	0	9	1	0	1	copy fasta	DUSP5	chr10	110492907	110516533
DUSP5_chr10_110492907_110516533	0/0	t0007	1320	8	0	0	8	0	0	copy fasta	DUSP5	chr10	110492907	110516533
DUSP5_chr10_110492907_110516533	0/0	t0008	1323	4	3	1	0	0	0	copy fasta	DUSP5	chr10	110492907	110516533
DUSP5_chr10_110492907_110516533	0/0	t0009	1323	4	0	3	0	1	0	copy fasta	DUSP5	chr10	110492907	110516533
DUSP5_chr10_110492907_110516533	0/0	t0010	1323	4	3	1	0	0	0	copy fasta	DUSP5	chr10	110492907	110516533
DUSP5_chr10_110492907_110516533	0/0	t0011	1323	3	3	0	0	0	0	copy fasta	DUSP5	chr10	110492907	110516533
DUSP5_chr10_110492907_110516533	0/0	t0012	1323	2	0	0	2	0	0	copy fasta	DUSP5	chr10	110492907	110516533
DUSP5_chr10_110492907_110516533	0/0	t0013	1323	2	0	1	0	1	0	copy fasta	DUSP5	chr10	110492907	110516533
DUSP5_chr10_110492907_110516533	0/0	t0014	1323	2	2	0	0	0	0	copy fasta	DUSP5	chr10	110492907	110516533
DUSP5_chr10_110492907_110516533	0/0	t0015	1323	1	1	0	0	0	0	copy fasta	DUSP5	chr10	110492907	110516533
DUSP5_chr10_110492907_110516533	0/0	t0016	1323	1	1	0	0	0	0	copy fasta	DUSP5	chr10	110492907	110516533
DUSP5_chr10_110492907_110516533	0/0	t0017	1323	1	0	0	1	0	0	copy fasta	DUSP5	chr10	110492907	110516533