JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
DUSP5_chr10_110492907_110516533	0/0	t0018	1323	1	0	0	1	0	0	copy fasta	DUSP5	chr10	110492907	110516533
DUSP5_chr10_110492907_110516533	0/0	t0019	1323	1	0	0	1	0	0	copy fasta	DUSP5	chr10	110492907	110516533
DUSP5_chr10_110492907_110516533	0/0	t0020	1323	1	1	0	0	0	0	copy fasta	DUSP5	chr10	110492907	110516533
DUSP5_chr10_110492907_110516533	0/0	t0021	1323	1	1	0	0	0	0	copy fasta	DUSP5	chr10	110492907	110516533
DUSP5_chr10_110492907_110516533	0/0	t0022	1323	1	0	0	1	0	0	copy fasta	DUSP5	chr10	110492907	110516533
DUSP5_chr10_110492907_110516533	0/0	t0023	1323	1	1	0	0	0	0	copy fasta	DUSP5	chr10	110492907	110516533
DUSP6_chr12_89342235_89357501	1/1	t0001	2482	285	40	53	153	7	30	copy fasta	DUSP6	chr12	89342235	89357501
DUSP6_chr12_89342235_89357501	0/0	t0002	2482	40	30	4	2	1	3	copy fasta	DUSP6	chr12	89342235	89357501
DUSP6_chr12_89342235_89357501	0/0	t0003	2469	21	2	15	1	0	3	copy fasta	DUSP6	chr12	89342235	89357501
DUSP6_chr12_89342235_89357501	0/0	t0004	2482	11	0	0	11	0	0	copy fasta	DUSP6	chr12	89342235	89357501
DUSP6_chr12_89342235_89357501	0/0	t0005	2482	9	8	1	0	0	0	copy fasta	DUSP6	chr12	89342235	89357501
DUSP6_chr12_89342235_89357501	0/0	t0006	2482	7	7	0	0	0	0	copy fasta	DUSP6	chr12	89342235	89357501
DUSP6_chr12_89342235_89357501	0/0	t0007	2482	7	4	1	0	0	2	copy fasta	DUSP6	chr12	89342235	89357501
DUSP6_chr12_89342235_89357501	0/0	t0008	2482	5	0	0	5	0	0	copy fasta	DUSP6	chr12	89342235	89357501
DUSP6_chr12_89342235_89357501	0/0	t0009	2482	4	1	3	0	0	0	copy fasta	DUSP6	chr12	89342235	89357501
DUSP6_chr12_89342235_89357501	0/0	t0010	2482	3	0	0	3	0	0	copy fasta	DUSP6	chr12	89342235	89357501
DUSP6_chr12_89342235_89357501	0/0	t0011	2482	1	0	0	1	0	0	copy fasta	DUSP6	chr12	89342235	89357501
DUSP6_chr12_89342235_89357501	0/0	t0012	2482	1	0	1	0	0	0	copy fasta	DUSP6	chr12	89342235	89357501
DUSP6_chr12_89342235_89357501	0/0	t0013	2482	1	1	0	0	0	0	copy fasta	DUSP6	chr12	89342235	89357501
DUSP6_chr12_89342235_89357501	0/0	t0014	2482	1	0	0	1	0	0	copy fasta	DUSP6	chr12	89342235	89357501
DUSP6_chr12_89342235_89357501	0/0	t0015	2482	1	0	0	1	0	0	copy fasta	DUSP6	chr12	89342235	89357501
DUSP6_chr12_89342235_89357501	0/0	t0016	2482	1	0	0	1	0	0	copy fasta	DUSP6	chr12	89342235	89357501
DUSP6_chr12_89342235_89357501	0/0	t0017	2482	1	0	0	1	0	0	copy fasta	DUSP6	chr12	89342235	89357501
DUSP6_chr12_89342235_89357501	0/0	t0018	2482	1	1	0	0	0	0	copy fasta	DUSP6	chr12	89342235	89357501
DUSP6_chr12_89342235_89357501	0/0	t0019	2482	1	1	0	0	0	0	copy fasta	DUSP6	chr12	89342235	89357501
DUSP6_chr12_89342235_89357501	0/0	t0020	2482	1	1	0	0	0	0	copy fasta	DUSP6	chr12	89342235	89357501
DUSP7_chr3_52043919_52061571	1/0	t0001	2102	200	48	45	79	5	22	copy fasta	DUSP7	chr3	52043919	52061571
DUSP7_chr3_52043919_52061571	0/0	t0002	2102	87	4	10	69	0	4	copy fasta	DUSP7	chr3	52043919	52061571
DUSP7_chr3_52043919_52061571	0/1	t0003	2101	46	16	3	20	3	3	copy fasta	DUSP7	chr3	52043919	52061571
DUSP7_chr3_52043919_52061571	0/0	t0004	2102	9	0	0	7	0	2	copy fasta	DUSP7	chr3	52043919	52061571
DUSP7_chr3_52043919_52061571	0/0	t0005	2107	7	4	3	0	0	0	copy fasta	DUSP7	chr3	52043919	52061571
DUSP7_chr3_52043919_52061571	0/0	t0006	2109	5	5	0	0	0	0	copy fasta	DUSP7	chr3	52043919	52061571
DUSP7_chr3_52043919_52061571	0/0	t0007	2101	3	0	1	2	0	0	copy fasta	DUSP7	chr3	52043919	52061571
DUSP7_chr3_52043919_52061571	0/0	t0008	2102	3	0	0	3	0	0	copy fasta	DUSP7	chr3	52043919	52061571
DUSP7_chr3_52043919_52061571	0/0	t0009	2106	3	0	0	3	0	0	copy fasta	DUSP7	chr3	52043919	52061571
DUSP7_chr3_52043919_52061571	0/0	t0010	2102	2	2	0	0	0	0	copy fasta	DUSP7	chr3	52043919	52061571
DUSP7_chr3_52043919_52061571	0/0	t0011	2102	2	0	0	2	0	0	copy fasta	DUSP7	chr3	52043919	52061571
DUSP7_chr3_52043919_52061571	0/0	t0012	2102	2	0	2	0	0	0	copy fasta	DUSP7	chr3	52043919	52061571
DUSP7_chr3_52043919_52061571	0/0	t0013	2114	2	0	2	0	0	0	copy fasta	DUSP7	chr3	52043919	52061571
DUSP7_chr3_52043919_52061571	0/0	t0014	2110	1	0	0	0	0	1	copy fasta	DUSP7	chr3	52043919	52061571
DUSP7_chr3_52043919_52061571	0/0	t0015	2102	1	0	0	1	0	0	copy fasta	DUSP7	chr3	52043919	52061571
DUSP7_chr3_52043919_52061571	0/0	t0016	2101	1	1	0	0	0	0	copy fasta	DUSP7	chr3	52043919	52061571
DUSP7_chr3_52043919_52061571	0/0	t0017	2101	1	0	0	1	0	0	copy fasta	DUSP7	chr3	52043919	52061571
DUSP7_chr3_52043919_52061571	0/0	t0018	2101	1	1	0	0	0	0	copy fasta	DUSP7	chr3	52043919	52061571
DUSP7_chr3_52043919_52061571	0/0	t0019	2101	1	0	0	1	0	0	copy fasta	DUSP7	chr3	52043919	52061571
DUSP7_chr3_52043919_52061571	0/0	t0020	2102	1	0	0	0	0	1	copy fasta	DUSP7	chr3	52043919	52061571
DUSP7_chr3_52043919_52061571	0/0	t0021	2102	1	0	0	1	0	0	copy fasta	DUSP7	chr3	52043919	52061571
DUSP7_chr3_52043919_52061571	0/0	t0022	2102	1	0	0	1	0	0	copy fasta	DUSP7	chr3	52043919	52061571
DUSP7_chr3_52043919_52061571	0/0	t0023	2103	1	1	0	0	0	0	copy fasta	DUSP7	chr3	52043919	52061571
DUSP7_chr3_52043919_52061571	0/0	t0024	2101	1	1	0	0	0	0	copy fasta	DUSP7	chr3	52043919	52061571