JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
DUSP7_chr3_52043919_52061571	0/0	t0025	2101	1	1	0	0	0	0	copy fasta	DUSP7	chr3	52043919	52061571
DUSP7_chr3_52043919_52061571	0/0	t0026	2101	1	0	0	0	0	1	copy fasta	DUSP7	chr3	52043919	52061571
DUSP8_chr11_1549051_1577271	0/1	t0001	2947	145	36	21	65	8	14	copy fasta	DUSP8	chr11	1549051	1577271
DUSP8_chr11_1549051_1577271	0/0	t0002	2947	97	15	15	56	3	8	copy fasta	DUSP8	chr11	1549051	1577271
DUSP8_chr11_1549051_1577271	0/0	t0003	2947	23	19	4	0	0	0	copy fasta	DUSP8	chr11	1549051	1577271
DUSP8_chr11_1549051_1577271	0/0	t0004	2947	22	3	7	8	3	1	copy fasta	DUSP8	chr11	1549051	1577271
DUSP8_chr11_1549051_1577271	0/0	t0005	2947	11	1	6	0	0	4	copy fasta	DUSP8	chr11	1549051	1577271
DUSP8_chr11_1549051_1577271	0/0	t0006	2947	11	2	3	0	0	6	copy fasta	DUSP8	chr11	1549051	1577271
DUSP8_chr11_1549051_1577271	0/0	t0007	2837	8	8	0	0	0	0	copy fasta	DUSP8	chr11	1549051	1577271
DUSP8_chr11_1549051_1577271	0/0	t0008	2947	8	1	5	0	2	0	copy fasta	DUSP8	chr11	1549051	1577271
DUSP8_chr11_1549051_1577271	0/0	t0009	2947	6	0	0	6	0	0	copy fasta	DUSP8	chr11	1549051	1577271
DUSP8_chr11_1549051_1577271	0/0	t0010	2948	3	0	2	1	0	0	copy fasta	DUSP8	chr11	1549051	1577271
DUSP8_chr11_1549051_1577271	0/0	t0011	2948	2	1	0	1	0	0	copy fasta	DUSP8	chr11	1549051	1577271
DUSP8_chr11_1549051_1577271	0/0	t0012	2948	2	0	0	2	0	0	copy fasta	DUSP8	chr11	1549051	1577271
DUSP8_chr11_1549051_1577271	0/0	t0013	2948	2	0	0	2	0	0	copy fasta	DUSP8	chr11	1549051	1577271
DUSP8_chr11_1549051_1577271	0/0	t0014	2947	2	0	0	2	0	0	copy fasta	DUSP8	chr11	1549051	1577271
DUSP8_chr11_1549051_1577271	0/0	t0015	2837	1	1	0	0	0	0	copy fasta	DUSP8	chr11	1549051	1577271
DUSP8_chr11_1549051_1577271	0/0	t0016	2948	1	0	0	0	0	1	copy fasta	DUSP8	chr11	1549051	1577271
DUSP8_chr11_1549051_1577271	0/0	t0017	2948	1	0	0	1	0	0	copy fasta	DUSP8	chr11	1549051	1577271
DUSP8_chr11_1549051_1577271	0/0	t0018	2948	1	0	0	1	0	0	copy fasta	DUSP8	chr11	1549051	1577271
DUSP8_chr11_1549051_1577271	0/0	t0019	2947	1	0	0	0	0	1	copy fasta	DUSP8	chr11	1549051	1577271
DUSP8_chr11_1549051_1577271	0/0	t0020	2947	1	0	1	0	0	0	copy fasta	DUSP8	chr11	1549051	1577271
DUSP8_chr11_1549051_1577271	0/0	t0021	2947	1	0	1	0	0	0	copy fasta	DUSP8	chr11	1549051	1577271
DUSP8_chr11_1549051_1577271	0/0	t0022	2947	1	0	0	0	0	1	copy fasta	DUSP8	chr11	1549051	1577271
DUSP8_chr11_1549051_1577271	0/0	t0023	2947	1	0	0	0	0	1	copy fasta	DUSP8	chr11	1549051	1577271
DUSP8_chr11_1549051_1577271	0/0	t0024	2947	1	0	0	1	0	0	copy fasta	DUSP8	chr11	1549051	1577271
DUSP8_chr11_1549051_1577271	0/0	t0025	2837	1	0	1	0	0	0	copy fasta	DUSP8	chr11	1549051	1577271
DUSP8_chr11_1549051_1577271	0/0	t0026	2947	1	0	0	1	0	0	copy fasta	DUSP8	chr11	1549051	1577271
DUSP8_chr11_1549051_1577271	0/0	t0027	2947	1	0	0	1	0	0	copy fasta	DUSP8	chr11	1549051	1577271
DUSP8_chr11_1549051_1577271	0/0	t0028	2947	1	1	0	0	0	0	copy fasta	DUSP8	chr11	1549051	1577271
DUSP8_chr11_1549051_1577271	0/0	t0029	2947	1	0	0	1	0	0	copy fasta	DUSP8	chr11	1549051	1577271
DUSP8_chr11_1549051_1577271	0/0	t0030	2947	1	0	1	0	0	0	copy fasta	DUSP8	chr11	1549051	1577271
DUSP8_chr11_1549051_1577271	0/0	t0031	2947	1	0	0	0	0	1	copy fasta	DUSP8	chr11	1549051	1577271
DUSP8_chr11_1549051_1577271	0/0	t0032	2947	1	0	0	1	0	0	copy fasta	DUSP8	chr11	1549051	1577271
DUSP8_chr11_1549051_1577271	0/0	t0033	2947	1	1	0	0	0	0	copy fasta	DUSP8	chr11	1549051	1577271
DUSP8_chr11_1549051_1577271	0/0	t0034	2947	1	0	0	1	0	0	copy fasta	DUSP8	chr11	1549051	1577271
DUSP8_chr11_1549051_1577271	0/0	t0035	2837	1	0	0	1	0	0	copy fasta	DUSP8	chr11	1549051	1577271
DUSP8_chr11_1549051_1577271	0/0	t0036	2947	1	0	1	0	0	0	copy fasta	DUSP8	chr11	1549051	1577271
DUSP8_chr11_1549051_1577271	0/0	t0037	3057	1	1	0	0	0	0	copy fasta	DUSP8	chr11	1549051	1577271
DUSP8_chr11_1549051_1577271	0/0	t0038	2947	1	0	0	1	0	0	copy fasta	DUSP8	chr11	1549051	1577271
DUSP8_chr11_1549051_1577271	0/0	t0039	2947	1	0	0	1	0	0	copy fasta	DUSP8	chr11	1549051	1577271
DUSP9_chrX_153642203_153656326	0/0	t0001	1281	235	54	40	117	5	19	copy fasta	DUSP9	chrX	153642203	153656326
DUSP9_chrX_153642203_153656326	0/1	t0002	1307	41	20	13	3	3	1	copy fasta	DUSP9	chrX	153642203	153656326
DUSP9_chrX_153642203_153656326	0/0	t0003	1281	20	0	5	6	1	8	copy fasta	DUSP9	chrX	153642203	153656326
DUSP9_chrX_153642203_153656326	0/0	t0004	1307	5	1	1	0	0	3	copy fasta	DUSP9	chrX	153642203	153656326
DUSP9_chrX_153642203_153656326	0/0	t0005	1281	5	0	0	5	0	0	copy fasta	DUSP9	chrX	153642203	153656326
DUSP9_chrX_153642203_153656326	0/0	t0006	1282	4	1	0	3	0	0	copy fasta	DUSP9	chrX	153642203	153656326
DUSP9_chrX_153642203_153656326	0/0	t0007	1290	3	0	0	3	0	0	copy fasta	DUSP9	chrX	153642203	153656326
DUSP9_chrX_153642203_153656326	0/0	t0008	1308	3	0	2	0	0	1	copy fasta	DUSP9	chrX	153642203	153656326
DUSP9_chrX_153642203_153656326	0/0	t0009	1280	1	0	0	1	0	0	copy fasta	DUSP9	chrX	153642203	153656326