JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
DUSP9_chrX_153642203_153656326	0/0	t0010	1283	1	0	0	1	0	0	copy fasta	DUSP9	chrX	153642203	153656326
DUSP9_chrX_153642203_153656326	0/0	t0011	1282	1	0	0	1	0	0	copy fasta	DUSP9	chrX	153642203	153656326
DUSP9_chrX_153642203_153656326	0/0	t0012	1281	1	0	0	1	0	0	copy fasta	DUSP9	chrX	153642203	153656326
DUSP9_chrX_153642203_153656326	0/0	t0013	1306	1	0	1	0	0	0	copy fasta	DUSP9	chrX	153642203	153656326
DUSP9_chrX_153642203_153656326	0/0	t0014	1307	1	1	0	0	0	0	copy fasta	DUSP9	chrX	153642203	153656326
DUSP9_chrX_153642203_153656326	0/0	t0015	1277	1	0	0	1	0	0	copy fasta	DUSP9	chrX	153642203	153656326
DUSP9_chrX_153642203_153656326	0/0	t0016	1281	1	0	1	0	0	0	copy fasta	DUSP9	chrX	153642203	153656326
DUSP9_chrX_153642203_153656326	0/0	t0017	1282	1	0	0	1	0	0	copy fasta	DUSP9	chrX	153642203	153656326
DUSP9_chrX_153642203_153656326	1/0	t0018	1280	1	0	0	0	0	0	copy fasta	DUSP9	chrX	153642203	153656326
DUSP9_chrX_153642203_153656326	0/0	t0019	1307	1	1	0	0	0	0	copy fasta	DUSP9	chrX	153642203	153656326
DUSP9_chrX_153642203_153656326	0/0	t0020	1286	1	0	0	1	0	0	copy fasta	DUSP9	chrX	153642203	153656326
DUT_chr15_48326429_48348373	1/1	t0001	1383	349	77	42	177	10	41	copy fasta	DUT	chr15	48326429	48348373
DUT_chr15_48326429_48348373	0/0	t0002	1383	13	3	9	1	0	0	copy fasta	DUT	chr15	48326429	48348373
DUT_chr15_48326429_48348373	0/0	t0003	1382	11	1	3	6	0	1	copy fasta	DUT	chr15	48326429	48348373
DUT_chr15_48326429_48348373	0/0	t0004	1383	4	4	0	0	0	0	copy fasta	DUT	chr15	48326429	48348373
DUT_chr15_48326429_48348373	0/0	t0005	1383	3	2	1	0	0	0	copy fasta	DUT	chr15	48326429	48348373
DUT_chr15_48326429_48348373	0/0	t0006	1383	3	3	0	0	0	0	copy fasta	DUT	chr15	48326429	48348373
DUT_chr15_48326429_48348373	0/0	t0007	1383	3	1	2	0	0	0	copy fasta	DUT	chr15	48326429	48348373
DUT_chr15_48326429_48348373	0/0	t0008	1383	1	1	0	0	0	0	copy fasta	DUT	chr15	48326429	48348373
DUT_chr15_48326429_48348373	0/0	t0009	1382	1	0	1	0	0	0	copy fasta	DUT	chr15	48326429	48348373
DUXA_chr19_57149021_57172485	1/1	t0001	434	277	69	41	139	6	20	copy fasta	DUXA	chr19	57149021	57172485
DUXA_chr19_57149021_57172485	0/0	t0002	434	158	23	41	58	10	26	copy fasta	DUXA	chr19	57149021	57172485
DUXA_chr19_57149021_57172485	0/0	t0003	433	6	6	0	0	0	0	copy fasta	DUXA	chr19	57149021	57172485
DUXA_chr19_57149021_57172485	0/0	t0004	434	2	0	0	2	0	0	copy fasta	DUXA	chr19	57149021	57172485
DUXA_chr19_57149021_57172485	0/0	t0005	434	1	0	0	1	0	0	copy fasta	DUXA	chr19	57149021	57172485
DUXA_chr19_57149021_57172485	0/0	t0006	434	1	0	0	1	0	0	copy fasta	DUXA	chr19	57149021	57172485
DUXA_chr19_57149021_57172485	0/0	t0007	434	1	0	0	1	0	0	copy fasta	DUXA	chr19	57149021	57172485
DUXB_chr16_75688893_75706461	1/0	t0001	80	250	45	56	115	2	31	copy fasta	DUXB	chr16	75688893	75706461
DUXB_chr16_75688893_75706461	0/1	t0002	80	160	39	19	81	9	11	copy fasta	DUXB	chr16	75688893	75706461
DUXB_chr16_75688893_75706461	0/0	t0003	80	10	5	2	2	1	0	copy fasta	DUXB	chr16	75688893	75706461
DUXB_chr16_75688893_75706461	0/0	t0004	80	2	1	1	0	0	0	copy fasta	DUXB	chr16	75688893	75706461
DVL1_chr1_1330278_1354418	0/1	t0001	1218	234	41	51	91	15	35	copy fasta	DVL1	chr1	1330278	1354418
DVL1_chr1_1330278_1354418	1/0	t0002	1218	41	5	2	28	0	5	copy fasta	DVL1	chr1	1330278	1354418
DVL1_chr1_1330278_1354418	0/0	t0003	1218	33	20	4	6	1	2	copy fasta	DVL1	chr1	1330278	1354418
DVL1_chr1_1330278_1354418	0/0	t0004	1218	11	11	0	0	0	0	copy fasta	DVL1	chr1	1330278	1354418
DVL1_chr1_1330278_1354418	0/0	t0005	1218	9	8	1	0	0	0	copy fasta	DVL1	chr1	1330278	1354418
DVL1_chr1_1330278_1354418	0/0	t0006	1218	2	0	2	0	0	0	copy fasta	DVL1	chr1	1330278	1354418
DVL1_chr1_1330278_1354418	0/0	t0007	1218	1	1	0	0	0	0	copy fasta	DVL1	chr1	1330278	1354418
DVL1_chr1_1330278_1354418	0/0	t0008	1218	1	1	0	0	0	0	copy fasta	DVL1	chr1	1330278	1354418
DVL1_chr1_1330278_1354418	0/0	t0009	1218	1	0	0	1	0	0	copy fasta	DVL1	chr1	1330278	1354418
DVL1_chr1_1330278_1354418	0/0	t0010	1218	1	1	0	0	0	0	copy fasta	DVL1	chr1	1330278	1354418
DVL1_chr1_1330278_1354418	0/0	t0011	1218	1	0	0	0	0	1	copy fasta	DVL1	chr1	1330278	1354418
DVL1_chr1_1330278_1354418	0/0	t0012	1218	1	0	0	1	0	0	copy fasta	DVL1	chr1	1330278	1354418
DVL1_chr1_1330278_1354418	0/0	t0013	1218	1	0	1	0	0	0	copy fasta	DVL1	chr1	1330278	1354418
DVL1_chr1_1330278_1354418	0/0	t0014	1218	1	0	1	0	0	0	copy fasta	DVL1	chr1	1330278	1354418
DVL1_chr1_1330278_1354418	0/0	t0015	1218	1	0	0	0	0	1	copy fasta	DVL1	chr1	1330278	1354418
DVL1_chr1_1330278_1354418	0/0	t0016	1218	1	1	0	0	0	0	copy fasta	DVL1	chr1	1330278	1354418
DVL1_chr1_1330278_1354418	0/0	t0017	1218	1	0	0	0	0	1	copy fasta	DVL1	chr1	1330278	1354418
DVL1_chr1_1330278_1354418	0/0	t0018	1218	1	0	0	0	0	1	copy fasta	DVL1	chr1	1330278	1354418
DVL1_chr1_1330278_1354418	0/0	t0019	1218	1	1	0	0	0	0	copy fasta	DVL1	chr1	1330278	1354418