JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
DVL1_chr1_1330278_1354418	0/0	t0020	1218	1	0	0	1	0	0	copy fasta	DVL1	chr1	1330278	1354418
DVL2_chr17_7220342_7239517	1/1	t0001	779	328	62	68	142	16	38	copy fasta	DVL2	chr17	7220342	7239517
DVL2_chr17_7220342_7239517	0/0	t0002	779	44	4	3	37	0	0	copy fasta	DVL2	chr17	7220342	7239517
DVL2_chr17_7220342_7239517	0/0	t0003	779	23	22	1	0	0	0	copy fasta	DVL2	chr17	7220342	7239517
DVL2_chr17_7220342_7239517	0/0	t0004	779	2	0	0	0	0	2	copy fasta	DVL2	chr17	7220342	7239517
DVL2_chr17_7220342_7239517	0/0	t0005	779	1	0	0	1	0	0	copy fasta	DVL2	chr17	7220342	7239517
DVL2_chr17_7220342_7239517	0/0	t0006	779	1	1	0	0	0	0	copy fasta	DVL2	chr17	7220342	7239517
DVL2_chr17_7220342_7239517	0/0	t0007	779	1	0	0	1	0	0	copy fasta	DVL2	chr17	7220342	7239517
DVL2_chr17_7220342_7239517	0/0	t0008	779	1	0	0	1	0	0	copy fasta	DVL2	chr17	7220342	7239517
DVL2_chr17_7220342_7239517	0/0	t0009	779	1	0	0	1	0	0	copy fasta	DVL2	chr17	7220342	7239517
DVL2_chr17_7220342_7239517	0/0	t0010	779	1	1	0	0	0	0	copy fasta	DVL2	chr17	7220342	7239517
DVL2_chr17_7220342_7239517	0/0	t0011	779	1	0	0	1	0	0	copy fasta	DVL2	chr17	7220342	7239517
DVL2_chr17_7220342_7239517	0/0	t0012	743	1	0	0	1	0	0	copy fasta	DVL2	chr17	7220342	7239517
DVL2_chr17_7220342_7239517	0/0	t0013	779	1	0	0	1	0	0	copy fasta	DVL2	chr17	7220342	7239517
DVL3_chr3_184150377_184178614	1/0	t0001	3119	148	26	36	63	9	13	copy fasta	DVL3	chr3	184150377	184178614
DVL3_chr3_184150377_184178614	0/0	t0002	3119	148	17	19	92	3	17	copy fasta	DVL3	chr3	184150377	184178614
DVL3_chr3_184150377_184178614	0/0	t0003	3119	30	22	6	0	2	0	copy fasta	DVL3	chr3	184150377	184178614
DVL3_chr3_184150377_184178614	0/1	t0004	3119	20	1	5	0	2	11	copy fasta	DVL3	chr3	184150377	184178614
DVL3_chr3_184150377_184178614	0/0	t0005	3119	7	6	1	0	0	0	copy fasta	DVL3	chr3	184150377	184178614
DVL3_chr3_184150377_184178614	0/0	t0006	3119	7	5	2	0	0	0	copy fasta	DVL3	chr3	184150377	184178614
DVL3_chr3_184150377_184178614	0/0	t0007	3119	6	0	0	6	0	0	copy fasta	DVL3	chr3	184150377	184178614
DVL3_chr3_184150377_184178614	0/0	t0008	3117	6	5	1	0	0	0	copy fasta	DVL3	chr3	184150377	184178614
DVL3_chr3_184150377_184178614	0/0	t0009	3119	3	0	3	0	0	0	copy fasta	DVL3	chr3	184150377	184178614
DVL3_chr3_184150377_184178614	0/0	t0010	3115	3	0	0	3	0	0	copy fasta	DVL3	chr3	184150377	184178614
DVL3_chr3_184150377_184178614	0/0	t0011	3119	2	2	0	0	0	0	copy fasta	DVL3	chr3	184150377	184178614
DVL3_chr3_184150377_184178614	0/0	t0012	3119	2	2	0	0	0	0	copy fasta	DVL3	chr3	184150377	184178614
DVL3_chr3_184150377_184178614	0/0	t0013	3119	2	2	0	0	0	0	copy fasta	DVL3	chr3	184150377	184178614
DVL3_chr3_184150377_184178614	0/0	t0014	3119	2	2	0	0	0	0	copy fasta	DVL3	chr3	184150377	184178614
DVL3_chr3_184150377_184178614	0/0	t0015	3119	1	0	0	1	0	0	copy fasta	DVL3	chr3	184150377	184178614
DVL3_chr3_184150377_184178614	0/0	t0016	3119	1	0	0	0	0	1	copy fasta	DVL3	chr3	184150377	184178614
DVL3_chr3_184150377_184178614	0/0	t0017	3119	1	0	0	1	0	0	copy fasta	DVL3	chr3	184150377	184178614
DVL3_chr3_184150377_184178614	0/0	t0018	3119	1	0	1	0	0	0	copy fasta	DVL3	chr3	184150377	184178614
DVL3_chr3_184150377_184178614	0/0	t0019	3119	1	1	0	0	0	0	copy fasta	DVL3	chr3	184150377	184178614
DVL3_chr3_184150377_184178614	0/0	t0020	3119	1	0	0	0	0	1	copy fasta	DVL3	chr3	184150377	184178614
DVL3_chr3_184150377_184178614	0/0	t0021	3119	1	1	0	0	0	0	copy fasta	DVL3	chr3	184150377	184178614
DVL3_chr3_184150377_184178614	0/0	t0022	3119	1	0	0	0	0	1	copy fasta	DVL3	chr3	184150377	184178614
DVL3_chr3_184150377_184178614	0/0	t0023	3119	1	0	1	0	0	0	copy fasta	DVL3	chr3	184150377	184178614
DVL3_chr3_184150377_184178614	0/0	t0024	3119	1	0	0	1	0	0	copy fasta	DVL3	chr3	184150377	184178614
DVL3_chr3_184150377_184178614	0/0	t0025	3119	1	0	1	0	0	0	copy fasta	DVL3	chr3	184150377	184178614
DVL3_chr3_184150377_184178614	0/0	t0026	3119	1	0	0	1	0	0	copy fasta	DVL3	chr3	184150377	184178614
DVL3_chr3_184150377_184178614	0/0	t0027	3119	1	1	0	0	0	0	copy fasta	DVL3	chr3	184150377	184178614
DVL3_chr3_184150377_184178614	0/0	t0028	3119	1	1	0	0	0	0	copy fasta	DVL3	chr3	184150377	184178614
DXO_chr6_31964815_31977138	0/1	t0001	279	430	94	73	202	18	42	copy fasta	DXO	chr6	31964815	31977138
DXO_chr6_31964815_31977138	0/0	t0002	279	1	0	0	1	0	0	copy fasta	DXO	chr6	31964815	31977138
DXO_chr6_31964815_31977138	0/0	t0003	279	1	0	0	1	0	0	copy fasta	DXO	chr6	31964815	31977138
DXO_chr6_31964815_31977138	0/0	t0004	279	1	0	1	0	0	0	copy fasta	DXO	chr6	31964815	31977138
DYDC1_chr10_80331105_80361755	0/0	t0001	105	326	84	62	134	7	39	copy fasta	DYDC1	chr10	80331105	80361755
DYDC1_chr10_80331105_80361755	1/1	t0002	105	40	4	16	10	3	5	copy fasta	DYDC1	chr10	80331105	80361755
DYDC2_chr10_80351781_80373073	0/0	t0001	1328	313	67	59	138	11	38	copy fasta	DYDC2	chr10	80351781	80373073
DYDC2_chr10_80351781_80373073	1/1	t0002	1330	37	3	18	8	1	5	copy fasta	DYDC2	chr10	80351781	80373073