JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
DYDC2_chr10_80351781_80373073	0/0	t0003	1328	11	0	0	10	0	1	copy fasta	DYDC2	chr10	80351781	80373073
DYDC2_chr10_80351781_80373073	0/0	t0004	1330	4	4	0	0	0	0	copy fasta	DYDC2	chr10	80351781	80373073
DYDC2_chr10_80351781_80373073	0/0	t0005	1330	4	4	0	0	0	0	copy fasta	DYDC2	chr10	80351781	80373073
DYDC2_chr10_80351781_80373073	0/0	t0006	1328	4	4	0	0	0	0	copy fasta	DYDC2	chr10	80351781	80373073
DYDC2_chr10_80351781_80373073	0/0	t0007	1327	3	3	0	0	0	0	copy fasta	DYDC2	chr10	80351781	80373073
DYDC2_chr10_80351781_80373073	0/0	t0008	1328	3	3	0	0	0	0	copy fasta	DYDC2	chr10	80351781	80373073
DYDC2_chr10_80351781_80373073	0/0	t0009	1328	2	2	0	0	0	0	copy fasta	DYDC2	chr10	80351781	80373073
DYDC2_chr10_80351781_80373073	0/0	t0010	1328	2	0	0	2	0	0	copy fasta	DYDC2	chr10	80351781	80373073
DYDC2_chr10_80351781_80373073	0/0	t0011	1330	1	1	0	0	0	0	copy fasta	DYDC2	chr10	80351781	80373073
DYDC2_chr10_80351781_80373073	0/0	t0012	1328	1	0	0	0	0	1	copy fasta	DYDC2	chr10	80351781	80373073
DYDC2_chr10_80351781_80373073	0/0	t0013	1328	1	1	0	0	0	0	copy fasta	DYDC2	chr10	80351781	80373073
DYDC2_chr10_80351781_80373073	0/0	t0014	1328	1	0	0	0	0	1	copy fasta	DYDC2	chr10	80351781	80373073
DYDC2_chr10_80351781_80373073	0/0	t0015	1328	1	0	1	0	0	0	copy fasta	DYDC2	chr10	80351781	80373073
DYM_chr18_49031387_49465645	0/0	t0001	7970	63	16	10	35	1	1	copy fasta	DYM	chr18	49031387	49465645
DYM_chr18_49031387_49465645	0/0	t0002	7968	54	2	16	30	1	5	copy fasta	DYM	chr18	49031387	49465645
DYM_chr18_49031387_49465645	0/0	t0003	7970	54	9	1	36	2	6	copy fasta	DYM	chr18	49031387	49465645
DYM_chr18_49031387_49465645	0/0	t0004	7970	26	8	10	0	5	3	copy fasta	DYM	chr18	49031387	49465645
DYM_chr18_49031387_49465645	0/0	t0005	7970	15	6	5	0	1	3	copy fasta	DYM	chr18	49031387	49465645
DYM_chr18_49031387_49465645	0/0	t0006	7967	7	1	5	0	1	0	copy fasta	DYM	chr18	49031387	49465645
DYM_chr18_49031387_49465645	0/0	t0007	7968	7	7	0	0	0	0	copy fasta	DYM	chr18	49031387	49465645
DYM_chr18_49031387_49465645	0/0	t0008	7970	6	0	1	2	0	3	copy fasta	DYM	chr18	49031387	49465645
DYM_chr18_49031387_49465645	0/0	t0009	7968	5	0	0	1	0	4	copy fasta	DYM	chr18	49031387	49465645
DYM_chr18_49031387_49465645	0/0	t0010	7970	5	0	0	5	0	0	copy fasta	DYM	chr18	49031387	49465645
DYM_chr18_49031387_49465645	0/0	t0011	7968	5	4	1	0	0	0	copy fasta	DYM	chr18	49031387	49465645
DYM_chr18_49031387_49465645	0/0	t0012	7968	3	0	0	3	0	0	copy fasta	DYM	chr18	49031387	49465645
DYM_chr18_49031387_49465645	0/0	t0013	7970	3	0	3	0	0	0	copy fasta	DYM	chr18	49031387	49465645
DYM_chr18_49031387_49465645	0/0	t0014	7970	2	0	1	0	0	1	copy fasta	DYM	chr18	49031387	49465645
DYM_chr18_49031387_49465645	0/0	t0015	7970	2	0	0	2	0	0	copy fasta	DYM	chr18	49031387	49465645
DYM_chr18_49031387_49465645	0/0	t0016	7970	2	0	1	0	0	1	copy fasta	DYM	chr18	49031387	49465645
DYM_chr18_49031387_49465645	0/0	t0017	7970	2	0	2	0	0	0	copy fasta	DYM	chr18	49031387	49465645
DYM_chr18_49031387_49465645	0/0	t0018	7970	2	0	0	2	0	0	copy fasta	DYM	chr18	49031387	49465645
DYM_chr18_49031387_49465645	0/0	t0019	7968	2	0	0	2	0	0	copy fasta	DYM	chr18	49031387	49465645
DYM_chr18_49031387_49465645	1/0	t0020	7970	2	1	0	0	0	0	copy fasta	DYM	chr18	49031387	49465645
DYM_chr18_49031387_49465645	0/0	t0021	7970	2	0	1	0	1	0	copy fasta	DYM	chr18	49031387	49465645
DYM_chr18_49031387_49465645	0/1	t0022	7970	2	0	0	0	1	0	copy fasta	DYM	chr18	49031387	49465645
DYM_chr18_49031387_49465645	0/0	t0023	7968	1	1	0	0	0	0	copy fasta	DYM	chr18	49031387	49465645
DYM_chr18_49031387_49465645	0/0	t0024	7970	1	1	0	0	0	0	copy fasta	DYM	chr18	49031387	49465645
DYM_chr18_49031387_49465645	0/0	t0025	7968	1	1	0	0	0	0	copy fasta	DYM	chr18	49031387	49465645
DYM_chr18_49031387_49465645	0/0	t0026	7968	1	1	0	0	0	0	copy fasta	DYM	chr18	49031387	49465645
DYM_chr18_49031387_49465645	0/0	t0027	7968	1	1	0	0	0	0	copy fasta	DYM	chr18	49031387	49465645
DYM_chr18_49031387_49465645	0/0	t0028	7970	1	0	0	0	0	1	copy fasta	DYM	chr18	49031387	49465645
DYM_chr18_49031387_49465645	0/0	t0029	7970	1	1	0	0	0	0	copy fasta	DYM	chr18	49031387	49465645
DYM_chr18_49031387_49465645	0/0	t0030	7970	1	1	0	0	0	0	copy fasta	DYM	chr18	49031387	49465645
DYM_chr18_49031387_49465645	0/0	t0031	7970	1	0	1	0	0	0	copy fasta	DYM	chr18	49031387	49465645
DYM_chr18_49031387_49465645	0/0	t0032	7970	1	0	0	1	0	0	copy fasta	DYM	chr18	49031387	49465645
DYM_chr18_49031387_49465645	0/0	t0033	7968	1	0	0	0	1	0	copy fasta	DYM	chr18	49031387	49465645
DYM_chr18_49031387_49465645	0/0	t0034	7970	1	0	0	1	0	0	copy fasta	DYM	chr18	49031387	49465645
DYM_chr18_49031387_49465645	0/0	t0035	7970	1	0	0	0	0	1	copy fasta	DYM	chr18	49031387	49465645
DYM_chr18_49031387_49465645	0/0	t0036	7970	1	1	0	0	0	0	copy fasta	DYM	chr18	49031387	49465645
DYM_chr18_49031387_49465645	0/0	t0037	7968	1	1	0	0	0	0	copy fasta	DYM	chr18	49031387	49465645