JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
DYM_chr18_49031387_49465645	0/0	t0038	7968	1	1	0	0	0	0	copy fasta	DYM	chr18	49031387	49465645
DYM_chr18_49031387_49465645	0/0	t0039	7968	1	1	0	0	0	0	copy fasta	DYM	chr18	49031387	49465645
DYM_chr18_49031387_49465645	0/0	t0040	7970	1	1	0	0	0	0	copy fasta	DYM	chr18	49031387	49465645
DYM_chr18_49031387_49465645	0/0	t0041	7970	1	0	0	0	0	1	copy fasta	DYM	chr18	49031387	49465645
DYNAP_chr18_54586245_54604493	0/0	t0001	1387	169	39	36	71	5	18	copy fasta	DYNAP	chr18	54586245	54604493
DYNAP_chr18_54586245_54604493	1/1	t0002	1387	165	47	31	60	8	17	copy fasta	DYNAP	chr18	54586245	54604493
DYNAP_chr18_54586245_54604493	0/0	t0003	1387	9	2	6	0	0	1	copy fasta	DYNAP	chr18	54586245	54604493
DYNAP_chr18_54586245_54604493	0/0	t0004	1387	5	3	2	0	0	0	copy fasta	DYNAP	chr18	54586245	54604493
DYNAP_chr18_54586245_54604493	0/0	t0005	1387	2	1	1	0	0	0	copy fasta	DYNAP	chr18	54586245	54604493
DYNAP_chr18_54586245_54604493	0/0	t0006	1387	2	2	0	0	0	0	copy fasta	DYNAP	chr18	54586245	54604493
DYNAP_chr18_54586245_54604493	0/0	t0007	1387	1	1	0	0	0	0	copy fasta	DYNAP	chr18	54586245	54604493
DYNAP_chr18_54586245_54604493	0/0	t0008	1387	1	0	0	0	0	1	copy fasta	DYNAP	chr18	54586245	54604493
DYNAP_chr18_54586245_54604493	0/0	t0009	1387	1	0	0	1	0	0	copy fasta	DYNAP	chr18	54586245	54604493
DYNAP_chr18_54586245_54604493	0/0	t0010	1387	1	0	0	0	1	0	copy fasta	DYNAP	chr18	54586245	54604493
DYNAP_chr18_54586245_54604493	0/0	t0011	1387	1	1	0	0	0	0	copy fasta	DYNAP	chr18	54586245	54604493
DYNAP_chr18_54586245_54604493	0/0	t0012	1387	1	0	0	0	0	1	copy fasta	DYNAP	chr18	54586245	54604493
DYNC1H1_chr14_101959573_102061443	1/0	t0001	6000	79	10	12	46	3	7	copy fasta	DYNC1H1	chr14	101959573	102061443
DYNC1H1_chr14_101959573_102061443	0/0	t0002	6004	38	0	5	31	0	2	copy fasta	DYNC1H1	chr14	101959573	102061443
DYNC1H1_chr14_101959573_102061443	0/0	t0003	6004	16	14	2	0	0	0	copy fasta	DYNC1H1	chr14	101959573	102061443
DYNC1H1_chr14_101959573_102061443	0/0	t0004	6001	14	10	3	0	0	1	copy fasta	DYNC1H1	chr14	101959573	102061443
DYNC1H1_chr14_101959573_102061443	0/0	t0005	5996	13	4	4	1	0	4	copy fasta	DYNC1H1	chr14	101959573	102061443
DYNC1H1_chr14_101959573_102061443	0/0	t0006	6008	11	0	1	10	0	0	copy fasta	DYNC1H1	chr14	101959573	102061443
DYNC1H1_chr14_101959573_102061443	0/0	t0007	6002	9	8	0	0	1	0	copy fasta	DYNC1H1	chr14	101959573	102061443
DYNC1H1_chr14_101959573_102061443	0/1	t0008	6001	6	0	3	1	1	0	copy fasta	DYNC1H1	chr14	101959573	102061443
DYNC1H1_chr14_101959573_102061443	0/0	t0009	6001	6	0	0	4	1	1	copy fasta	DYNC1H1	chr14	101959573	102061443
DYNC1H1_chr14_101959573_102061443	0/0	t0010	6002	6	5	1	0	0	0	copy fasta	DYNC1H1	chr14	101959573	102061443
DYNC1H1_chr14_101959573_102061443	0/0	t0011	5999	5	1	1	3	0	0	copy fasta	DYNC1H1	chr14	101959573	102061443
DYNC1H1_chr14_101959573_102061443	0/0	t0012	5999	5	2	1	2	0	0	copy fasta	DYNC1H1	chr14	101959573	102061443
DYNC1H1_chr14_101959573_102061443	0/0	t0013	6003	4	0	1	2	0	1	copy fasta	DYNC1H1	chr14	101959573	102061443
DYNC1H1_chr14_101959573_102061443	0/0	t0014	6002	4	2	2	0	0	0	copy fasta	DYNC1H1	chr14	101959573	102061443
DYNC1H1_chr14_101959573_102061443	0/0	t0015	6000	3	1	0	0	0	2	copy fasta	DYNC1H1	chr14	101959573	102061443
DYNC1H1_chr14_101959573_102061443	0/0	t0016	6004	3	3	0	0	0	0	copy fasta	DYNC1H1	chr14	101959573	102061443
DYNC1H1_chr14_101959573_102061443	0/0	t0017	6006	3	3	0	0	0	0	copy fasta	DYNC1H1	chr14	101959573	102061443
DYNC1H1_chr14_101959573_102061443	0/0	t0018	6005	3	0	0	3	0	0	copy fasta	DYNC1H1	chr14	101959573	102061443
DYNC1H1_chr14_101959573_102061443	0/0	t0019	5998	3	3	0	0	0	0	copy fasta	DYNC1H1	chr14	101959573	102061443
DYNC1H1_chr14_101959573_102061443	0/0	t0020	6000	2	2	0	0	0	0	copy fasta	DYNC1H1	chr14	101959573	102061443
DYNC1H1_chr14_101959573_102061443	0/0	t0021	5999	2	2	0	0	0	0	copy fasta	DYNC1H1	chr14	101959573	102061443
DYNC1H1_chr14_101959573_102061443	0/0	t0022	6000	2	0	1	1	0	0	copy fasta	DYNC1H1	chr14	101959573	102061443
DYNC1H1_chr14_101959573_102061443	0/0	t0023	6005	2	0	0	2	0	0	copy fasta	DYNC1H1	chr14	101959573	102061443
DYNC1H1_chr14_101959573_102061443	0/0	t0024	5999	2	1	0	0	0	1	copy fasta	DYNC1H1	chr14	101959573	102061443
DYNC1H1_chr14_101959573_102061443	0/0	t0025	6009	1	0	0	0	0	1	copy fasta	DYNC1H1	chr14	101959573	102061443
DYNC1H1_chr14_101959573_102061443	0/0	t0026	6004	1	0	0	1	0	0	copy fasta	DYNC1H1	chr14	101959573	102061443
DYNC1H1_chr14_101959573_102061443	0/0	t0027	6000	1	0	0	0	0	1	copy fasta	DYNC1H1	chr14	101959573	102061443
DYNC1H1_chr14_101959573_102061443	0/0	t0028	6000	1	1	0	0	0	0	copy fasta	DYNC1H1	chr14	101959573	102061443
DYNC1H1_chr14_101959573_102061443	0/0	t0029	5998	1	0	0	1	0	0	copy fasta	DYNC1H1	chr14	101959573	102061443
DYNC1H1_chr14_101959573_102061443	0/0	t0030	6000	1	0	1	0	0	0	copy fasta	DYNC1H1	chr14	101959573	102061443
DYNC1H1_chr14_101959573_102061443	0/0	t0031	6000	1	0	0	1	0	0	copy fasta	DYNC1H1	chr14	101959573	102061443
DYNC1H1_chr14_101959573_102061443	0/0	t0032	6000	1	1	0	0	0	0	copy fasta	DYNC1H1	chr14	101959573	102061443
DYNC1H1_chr14_101959573_102061443	0/0	t0033	6001	1	0	0	1	0	0	copy fasta	DYNC1H1	chr14	101959573	102061443
DYNC1H1_chr14_101959573_102061443	0/0	t0034	6003	1	0	0	1	0	0	copy fasta	DYNC1H1	chr14	101959573	102061443