JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
DYNC1LI1_chr3_32520974_32575858	0/0	t0003	910	16	0	3	11	0	2	copy fasta	DYNC1LI1	chr3	32520974	32575858
DYNC1LI1_chr3_32520974_32575858	0/0	t0004	914	8	3	2	0	2	1	copy fasta	DYNC1LI1	chr3	32520974	32575858
DYNC1LI1_chr3_32520974_32575858	0/0	t0005	912	6	1	2	0	1	2	copy fasta	DYNC1LI1	chr3	32520974	32575858
DYNC1LI1_chr3_32520974_32575858	0/0	t0006	916	6	5	0	1	0	0	copy fasta	DYNC1LI1	chr3	32520974	32575858
DYNC1LI1_chr3_32520974_32575858	0/0	t0007	918	5	1	0	4	0	0	copy fasta	DYNC1LI1	chr3	32520974	32575858
DYNC1LI1_chr3_32520974_32575858	0/0	t0008	922	5	5	0	0	0	0	copy fasta	DYNC1LI1	chr3	32520974	32575858
DYNC1LI1_chr3_32520974_32575858	0/0	t0009	920	4	4	0	0	0	0	copy fasta	DYNC1LI1	chr3	32520974	32575858
DYNC1LI1_chr3_32520974_32575858	0/0	t0010	924	4	3	1	0	0	0	copy fasta	DYNC1LI1	chr3	32520974	32575858
DYNC1LI1_chr3_32520974_32575858	0/0	t0011	918	3	1	1	1	0	0	copy fasta	DYNC1LI1	chr3	32520974	32575858
DYNC1LI1_chr3_32520974_32575858	0/0	t0012	918	2	0	0	0	2	0	copy fasta	DYNC1LI1	chr3	32520974	32575858
DYNC1LI1_chr3_32520974_32575858	0/0	t0013	922	2	2	0	0	0	0	copy fasta	DYNC1LI1	chr3	32520974	32575858
DYNC1LI1_chr3_32520974_32575858	0/0	t0014	916	1	1	0	0	0	0	copy fasta	DYNC1LI1	chr3	32520974	32575858
DYNC1LI1_chr3_32520974_32575858	0/0	t0015	914	1	1	0	0	0	0	copy fasta	DYNC1LI1	chr3	32520974	32575858
DYNC1LI1_chr3_32520974_32575858	0/0	t0016	916	1	1	0	0	0	0	copy fasta	DYNC1LI1	chr3	32520974	32575858
DYNC1LI1_chr3_32520974_32575858	0/0	t0017	920	1	1	0	0	0	0	copy fasta	DYNC1LI1	chr3	32520974	32575858
DYNC1LI2_chr16_66715893_66756609	1/1	t0001	2848	296	78	51	118	10	37	copy fasta	DYNC1LI2	chr16	66715893	66756609
DYNC1LI2_chr16_66715893_66756609	0/0	t0002	2848	18	0	0	17	0	1	copy fasta	DYNC1LI2	chr16	66715893	66756609
DYNC1LI2_chr16_66715893_66756609	0/0	t0003	2847	11	7	0	2	2	0	copy fasta	DYNC1LI2	chr16	66715893	66756609
DYNC1LI2_chr16_66715893_66756609	0/0	t0004	2848	2	0	0	0	0	2	copy fasta	DYNC1LI2	chr16	66715893	66756609
DYNC1LI2_chr16_66715893_66756609	0/0	t0005	2848	2	0	0	2	0	0	copy fasta	DYNC1LI2	chr16	66715893	66756609
DYNC1LI2_chr16_66715893_66756609	0/0	t0006	2848	1	0	0	0	0	1	copy fasta	DYNC1LI2	chr16	66715893	66756609
DYNC1LI2_chr16_66715893_66756609	0/0	t0007	2848	1	0	0	1	0	0	copy fasta	DYNC1LI2	chr16	66715893	66756609
DYNC1LI2_chr16_66715893_66756609	0/0	t0008	2848	1	0	0	1	0	0	copy fasta	DYNC1LI2	chr16	66715893	66756609
DYNC1LI2_chr16_66715893_66756609	0/0	t0009	2848	1	0	0	1	0	0	copy fasta	DYNC1LI2	chr16	66715893	66756609
DYNC1LI2_chr16_66715893_66756609	0/0	t0010	2848	1	0	0	1	0	0	copy fasta	DYNC1LI2	chr16	66715893	66756609
DYNC1LI2_chr16_66715893_66756609	0/0	t0011	2848	1	1	0	0	0	0	copy fasta	DYNC1LI2	chr16	66715893	66756609
DYNC1LI2_chr16_66715893_66756609	0/0	t0012	2848	1	1	0	0	0	0	copy fasta	DYNC1LI2	chr16	66715893	66756609
DYNC1LI2_chr16_66715893_66756609	0/0	t0013	2848	1	1	0	0	0	0	copy fasta	DYNC1LI2	chr16	66715893	66756609
DYNC1LI2_chr16_66715893_66756609	0/0	t0014	2848	1	0	1	0	0	0	copy fasta	DYNC1LI2	chr16	66715893	66756609
DYNC1LI2_chr16_66715893_66756609	0/0	t0015	2848	1	0	0	1	0	0	copy fasta	DYNC1LI2	chr16	66715893	66756609
DYNC1LI2_chr16_66715893_66756609	0/0	t0016	2848	1	0	0	0	0	1	copy fasta	DYNC1LI2	chr16	66715893	66756609
DYNC2H1_chr11_103104426_103484863	1/1	t0001	760	248	77	38	101	6	24	copy fasta	DYNC2H1	chr11	103104426	103484863
DYNC2H1_chr11_103104426_103484863	0/0	t0002	760	7	7	0	0	0	0	copy fasta	DYNC2H1	chr11	103104426	103484863
DYNC2H1_chr11_103104426_103484863	0/0	t0003	760	3	3	0	0	0	0	copy fasta	DYNC2H1	chr11	103104426	103484863
DYNC2H1_chr11_103104426_103484863	0/0	t0004	760	2	0	0	2	0	0	copy fasta	DYNC2H1	chr11	103104426	103484863
DYNC2H1_chr11_103104426_103484863	0/0	t0005	760	1	1	0	0	0	0	copy fasta	DYNC2H1	chr11	103104426	103484863
DYNC2H1_chr11_103104426_103484863	0/0	t0006	760	1	0	0	1	0	0	copy fasta	DYNC2H1	chr11	103104426	103484863
DYNC2I1_chr7_158851558_158951189	0/1	t0001	589	107	18	27	47	4	10	copy fasta	DYNC2I1	chr7	158851558	158951189
DYNC2I1_chr7_158851558_158951189	0/0	t0002	589	82	10	17	46	1	8	copy fasta	DYNC2I1	chr7	158851558	158951189
DYNC2I1_chr7_158851558_158951189	0/0	t0003	589	25	2	1	21	0	1	copy fasta	DYNC2I1	chr7	158851558	158951189
DYNC2I1_chr7_158851558_158951189	0/0	t0004	589	22	1	8	3	4	6	copy fasta	DYNC2I1	chr7	158851558	158951189
DYNC2I1_chr7_158851558_158951189	0/0	t0005	589	5	0	0	3	1	1	copy fasta	DYNC2I1	chr7	158851558	158951189
DYNC2I1_chr7_158851558_158951189	0/0	t0006	589	5	5	0	0	0	0	copy fasta	DYNC2I1	chr7	158851558	158951189
DYNC2I1_chr7_158851558_158951189	0/0	t0007	589	5	0	0	5	0	0	copy fasta	DYNC2I1	chr7	158851558	158951189
DYNC2I1_chr7_158851558_158951189	0/0	t0008	589	3	3	0	0	0	0	copy fasta	DYNC2I1	chr7	158851558	158951189
DYNC2I1_chr7_158851558_158951189	0/0	t0009	589	3	3	0	0	0	0	copy fasta	DYNC2I1	chr7	158851558	158951189
DYNC2I1_chr7_158851558_158951189	1/0	t0010	589	2	1	0	0	0	0	copy fasta	DYNC2I1	chr7	158851558	158951189
DYNC2I1_chr7_158851558_158951189	0/0	t0011	589	2	2	0	0	0	0	copy fasta	DYNC2I1	chr7	158851558	158951189
DYNC2I1_chr7_158851558_158951189	0/0	t0012	589	2	2	0	0	0	0	copy fasta	DYNC2I1	chr7	158851558	158951189
DYNC2I1_chr7_158851558_158951189	0/0	t0013	589	1	0	0	1	0	0	copy fasta	DYNC2I1	chr7	158851558	158951189