JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
DYNC2I1_chr7_158851558_158951189	0/0	t0014	589	1	0	0	0	0	1	copy fasta	DYNC2I1	chr7	158851558	158951189
DYNC2I1_chr7_158851558_158951189	0/0	t0015	589	1	0	1	0	0	0	copy fasta	DYNC2I1	chr7	158851558	158951189
DYNC2I1_chr7_158851558_158951189	0/0	t0016	589	1	0	0	0	0	1	copy fasta	DYNC2I1	chr7	158851558	158951189
DYNC2I1_chr7_158851558_158951189	0/0	t0017	589	1	0	0	1	0	0	copy fasta	DYNC2I1	chr7	158851558	158951189
DYNC2I1_chr7_158851558_158951189	0/0	t0018	589	1	1	0	0	0	0	copy fasta	DYNC2I1	chr7	158851558	158951189
DYNC2I1_chr7_158851558_158951189	0/0	t0019	589	1	0	0	1	0	0	copy fasta	DYNC2I1	chr7	158851558	158951189
DYNC2I1_chr7_158851558_158951189	0/0	t0020	589	1	1	0	0	0	0	copy fasta	DYNC2I1	chr7	158851558	158951189
DYNC2I1_chr7_158851558_158951189	0/0	t0021	589	1	1	0	0	0	0	copy fasta	DYNC2I1	chr7	158851558	158951189
DYNC2I1_chr7_158851558_158951189	0/0	t0022	589	1	1	0	0	0	0	copy fasta	DYNC2I1	chr7	158851558	158951189
DYNC2I1_chr7_158851558_158951189	0/0	t0023	589	1	1	0	0	0	0	copy fasta	DYNC2I1	chr7	158851558	158951189
DYNC2I2_chr9_128628653_128661847	1/1	t0001	213	354	85	51	172	8	36	copy fasta	DYNC2I2	chr9	128628653	128661847
DYNC2I2_chr9_128628653_128661847	0/0	t0002	213	8	6	2	0	0	0	copy fasta	DYNC2I2	chr9	128628653	128661847
DYNC2I2_chr9_128628653_128661847	0/0	t0003	213	2	2	0	0	0	0	copy fasta	DYNC2I2	chr9	128628653	128661847
DYNC2I2_chr9_128628653_128661847	0/0	t0004	213	2	0	0	0	2	0	copy fasta	DYNC2I2	chr9	128628653	128661847
DYNC2I2_chr9_128628653_128661847	0/0	t0005	213	1	0	1	0	0	0	copy fasta	DYNC2I2	chr9	128628653	128661847
DYNC2I2_chr9_128628653_128661847	0/0	t0006	213	1	1	0	0	0	0	copy fasta	DYNC2I2	chr9	128628653	128661847
DYNC2LI1_chr2_43769039_43815010	1/1	t0001	344	123	25	33	38	7	18	copy fasta	DYNC2LI1	chr2	43769039	43815010
DYNC2LI1_chr2_43769039_43815010	0/0	t0002	344	93	39	22	20	3	9	copy fasta	DYNC2LI1	chr2	43769039	43815010
DYNC2LI1_chr2_43769039_43815010	0/0	t0003	344	40	14	7	7	2	10	copy fasta	DYNC2LI1	chr2	43769039	43815010
DYNC2LI1_chr2_43769039_43815010	0/0	t0004	344	16	6	2	7	1	0	copy fasta	DYNC2LI1	chr2	43769039	43815010
DYNC2LI1_chr2_43769039_43815010	0/0	t0005	344	16	11	4	0	0	1	copy fasta	DYNC2LI1	chr2	43769039	43815010
DYNC2LI1_chr2_43769039_43815010	0/0	t0006	344	3	0	2	0	1	0	copy fasta	DYNC2LI1	chr2	43769039	43815010
DYNC2LI1_chr2_43769039_43815010	0/0	t0007	344	2	2	0	0	0	0	copy fasta	DYNC2LI1	chr2	43769039	43815010
DYNC2LI1_chr2_43769039_43815010	0/0	t0008	344	1	1	0	0	0	0	copy fasta	DYNC2LI1	chr2	43769039	43815010
DYNLL1_chr12_120491113_120503493	0/1	t0001	394	302	49	56	149	11	36	copy fasta	DYNLL1	chr12	120491113	120503493
DYNLL1_chr12_120491113_120503493	1/0	t0002	394	62	24	4	28	1	4	copy fasta	DYNLL1	chr12	120491113	120503493
DYNLL1_chr12_120491113_120503493	0/0	t0003	394	36	18	8	5	1	4	copy fasta	DYNLL1	chr12	120491113	120503493
DYNLL1_chr12_120491113_120503493	0/0	t0004	394	3	3	0	0	0	0	copy fasta	DYNLL1	chr12	120491113	120503493
DYNLL1_chr12_120491113_120503493	0/0	t0005	394	2	0	0	2	0	0	copy fasta	DYNLL1	chr12	120491113	120503493
DYNLL1_chr12_120491113_120503493	0/0	t0006	394	1	0	0	0	1	0	copy fasta	DYNLL1	chr12	120491113	120503493
DYNLL1_chr12_120491113_120503493	0/0	t0007	394	1	0	0	1	0	0	copy fasta	DYNLL1	chr12	120491113	120503493
DYNLL1_chr12_120491113_120503493	0/0	t0008	394	1	0	0	1	0	0	copy fasta	DYNLL1	chr12	120491113	120503493
DYNLL2_chr17_58078419_58100542	0/0	t0001	6539	125	16	21	56	5	27	copy fasta	DYNLL2	chr17	58078419	58100542
DYNLL2_chr17_58078419_58100542	0/0	t0002	6538	40	26	9	0	3	2	copy fasta	DYNLL2	chr17	58078419	58100542
DYNLL2_chr17_58078419_58100542	0/0	t0003	6496	25	6	2	15	0	2	copy fasta	DYNLL2	chr17	58078419	58100542
DYNLL2_chr17_58078419_58100542	1/1	t0004	6538	25	3	13	0	5	2	copy fasta	DYNLL2	chr17	58078419	58100542
DYNLL2_chr17_58078419_58100542	0/0	t0005	6541	14	13	1	0	0	0	copy fasta	DYNLL2	chr17	58078419	58100542
DYNLL2_chr17_58078419_58100542	0/0	t0006	6543	6	0	2	0	3	1	copy fasta	DYNLL2	chr17	58078419	58100542
DYNLL2_chr17_58078419_58100542	0/0	t0007	6547	6	0	3	3	0	0	copy fasta	DYNLL2	chr17	58078419	58100542
DYNLL2_chr17_58078419_58100542	0/0	t0008	6496	5	4	1	0	0	0	copy fasta	DYNLL2	chr17	58078419	58100542
DYNLL2_chr17_58078419_58100542	0/0	t0009	6533	4	4	0	0	0	0	copy fasta	DYNLL2	chr17	58078419	58100542
DYNLL2_chr17_58078419_58100542	0/0	t0010	6531	3	0	1	2	0	0	copy fasta	DYNLL2	chr17	58078419	58100542
DYNLL2_chr17_58078419_58100542	0/0	t0011	6535	3	0	1	2	0	0	copy fasta	DYNLL2	chr17	58078419	58100542
DYNLL2_chr17_58078419_58100542	0/0	t0012	6539	3	0	0	3	0	0	copy fasta	DYNLL2	chr17	58078419	58100542
DYNLL2_chr17_58078419_58100542	0/0	t0013	6539	3	0	0	3	0	0	copy fasta	DYNLL2	chr17	58078419	58100542
DYNLL2_chr17_58078419_58100542	0/0	t0014	6538	3	3	0	0	0	0	copy fasta	DYNLL2	chr17	58078419	58100542
DYNLL2_chr17_58078419_58100542	0/0	t0015	6531	2	0	0	2	0	0	copy fasta	DYNLL2	chr17	58078419	58100542
DYNLL2_chr17_58078419_58100542	0/0	t0016	6538	2	0	1	0	1	0	copy fasta	DYNLL2	chr17	58078419	58100542
DYNLL2_chr17_58078419_58100542	0/0	t0017	6539	2	0	0	2	0	0	copy fasta	DYNLL2	chr17	58078419	58100542
DYNLL2_chr17_58078419_58100542	0/0	t0018	6539	2	0	0	2	0	0	copy fasta	DYNLL2	chr17	58078419	58100542