JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
DYNLL2_chr17_58078419_58100542	0/0	t0019	6539	2	0	0	2	0	0	copy fasta	DYNLL2	chr17	58078419	58100542
DYNLL2_chr17_58078419_58100542	0/0	t0020	6539	2	0	0	2	0	0	copy fasta	DYNLL2	chr17	58078419	58100542
DYNLL2_chr17_58078419_58100542	0/0	t0021	6542	2	2	0	0	0	0	copy fasta	DYNLL2	chr17	58078419	58100542
DYNLL2_chr17_58078419_58100542	0/0	t0022	6558	1	1	0	0	0	0	copy fasta	DYNLL2	chr17	58078419	58100542
DYNLL2_chr17_58078419_58100542	0/0	t0023	6496	1	1	0	0	0	0	copy fasta	DYNLL2	chr17	58078419	58100542
DYNLL2_chr17_58078419_58100542	0/0	t0024	6496	1	1	0	0	0	0	copy fasta	DYNLL2	chr17	58078419	58100542
DYNLL2_chr17_58078419_58100542	0/0	t0025	6535	1	0	1	0	0	0	copy fasta	DYNLL2	chr17	58078419	58100542
DYNLL2_chr17_58078419_58100542	0/0	t0026	6538	1	1	0	0	0	0	copy fasta	DYNLL2	chr17	58078419	58100542
DYNLL2_chr17_58078419_58100542	0/0	t0027	6539	1	0	0	1	0	0	copy fasta	DYNLL2	chr17	58078419	58100542
DYNLL2_chr17_58078419_58100542	0/0	t0028	6539	1	0	0	0	1	0	copy fasta	DYNLL2	chr17	58078419	58100542
DYNLL2_chr17_58078419_58100542	0/0	t0029	6539	1	0	0	1	0	0	copy fasta	DYNLL2	chr17	58078419	58100542
DYNLL2_chr17_58078419_58100542	0/0	t0030	6539	1	0	0	0	0	1	copy fasta	DYNLL2	chr17	58078419	58100542
DYNLL2_chr17_58078419_58100542	0/0	t0031	6539	1	0	0	0	0	1	copy fasta	DYNLL2	chr17	58078419	58100542
DYNLL2_chr17_58078419_58100542	0/0	t0032	6539	1	0	0	1	0	0	copy fasta	DYNLL2	chr17	58078419	58100542
DYNLL2_chr17_58078419_58100542	0/0	t0033	6539	1	1	0	0	0	0	copy fasta	DYNLL2	chr17	58078419	58100542
DYNLL2_chr17_58078419_58100542	0/0	t0034	6539	1	0	1	0	0	0	copy fasta	DYNLL2	chr17	58078419	58100542
DYNLL2_chr17_58078419_58100542	0/0	t0035	6539	1	1	0	0	0	0	copy fasta	DYNLL2	chr17	58078419	58100542
DYNLL2_chr17_58078419_58100542	0/0	t0036	6541	1	0	1	0	0	0	copy fasta	DYNLL2	chr17	58078419	58100542
DYNLL2_chr17_58078419_58100542	0/0	t0037	6542	1	1	0	0	0	0	copy fasta	DYNLL2	chr17	58078419	58100542
DYNLL2_chr17_58078419_58100542	0/0	t0038	6539	1	1	0	0	0	0	copy fasta	DYNLL2	chr17	58078419	58100542
DYNLL2_chr17_58078419_58100542	0/0	t0039	6539	1	1	0	0	0	0	copy fasta	DYNLL2	chr17	58078419	58100542
DYNLL2_chr17_58078419_58100542	0/0	t0040	6539	1	0	1	0	0	0	copy fasta	DYNLL2	chr17	58078419	58100542
DYNLL2_chr17_58078419_58100542	0/0	t0041	6539	1	0	1	0	0	0	copy fasta	DYNLL2	chr17	58078419	58100542
DYNLL2_chr17_58078419_58100542	0/0	t0042	6539	1	0	1	0	0	0	copy fasta	DYNLL2	chr17	58078419	58100542
DYNLL2_chr17_58078419_58100542	0/0	t0043	6543	1	1	0	0	0	0	copy fasta	DYNLL2	chr17	58078419	58100542
DYNLL2_chr17_58078419_58100542	0/0	t0044	6543	1	1	0	0	0	0	copy fasta	DYNLL2	chr17	58078419	58100542
DYNLL2_chr17_58078419_58100542	0/0	t0045	6547	1	1	0	0	0	0	copy fasta	DYNLL2	chr17	58078419	58100542
DYNLL2_chr17_58078419_58100542	0/0	t0046	6547	1	0	0	1	0	0	copy fasta	DYNLL2	chr17	58078419	58100542
DYNLL2_chr17_58078419_58100542	0/0	t0047	6535	1	1	0	0	0	0	copy fasta	DYNLL2	chr17	58078419	58100542
DYNLL2_chr17_58078419_58100542	0/0	t0048	6538	1	0	1	0	0	0	copy fasta	DYNLL2	chr17	58078419	58100542
DYNLRB1_chr20_34511422_34545958	1/1	t0001	372	382	79	65	172	14	50	copy fasta	DYNLRB1	chr20	34511422	34545958
DYNLRB1_chr20_34511422_34545958	0/0	t0002	372	1	1	0	0	0	0	copy fasta	DYNLRB1	chr20	34511422	34545958
DYNLRB1_chr20_34511422_34545958	0/0	t0003	372	1	0	1	0	0	0	copy fasta	DYNLRB1	chr20	34511422	34545958
DYNLRB2_chr16_80535993_80555811	1/1	t0001	338	363	46	70	190	16	39	copy fasta	DYNLRB2	chr16	80535993	80555811
DYNLRB2_chr16_80535993_80555811	0/0	t0002	338	28	23	5	0	0	0	copy fasta	DYNLRB2	chr16	80535993	80555811
DYNLRB2_chr16_80535993_80555811	0/0	t0003	338	12	12	0	0	0	0	copy fasta	DYNLRB2	chr16	80535993	80555811
DYNLRB2_chr16_80535993_80555811	0/0	t0004	338	6	6	0	0	0	0	copy fasta	DYNLRB2	chr16	80535993	80555811
DYNLRB2_chr16_80535993_80555811	0/0	t0005	338	5	1	3	0	0	1	copy fasta	DYNLRB2	chr16	80535993	80555811
DYNLRB2_chr16_80535993_80555811	0/0	t0006	338	1	1	0	0	0	0	copy fasta	DYNLRB2	chr16	80535993	80555811
DYNLRB2_chr16_80535993_80555811	0/0	t0007	338	1	1	0	0	0	0	copy fasta	DYNLRB2	chr16	80535993	80555811
DYNLT1_chr6_158631474_158649743	0/1	t0001	389	289	84	53	121	6	24	copy fasta	DYNLT1	chr6	158631474	158649743
DYNLT1_chr6_158631474_158649743	1/0	t0002	389	100	10	20	41	9	19	copy fasta	DYNLT1	chr6	158631474	158649743
DYNLT1_chr6_158631474_158649743	0/0	t0003	389	3	0	1	0	1	1	copy fasta	DYNLT1	chr6	158631474	158649743
DYNLT1_chr6_158631474_158649743	0/0	t0004	389	1	0	0	1	0	0	copy fasta	DYNLT1	chr6	158631474	158649743
DYNLT1_chr6_158631474_158649743	0/0	t0005	389	1	1	0	0	0	0	copy fasta	DYNLT1	chr6	158631474	158649743
DYNLT1_chr6_158631474_158649743	0/0	t0006	389	1	1	0	0	0	0	copy fasta	DYNLT1	chr6	158631474	158649743
DYNLT1_chr6_158631474_158649743	0/0	t0007	389	1	0	0	1	0	0	copy fasta	DYNLT1	chr6	158631474	158649743
DYNLT2B_chr3_196286219_196323240	1/1	t0001	197	329	94	64	111	16	42	copy fasta	DYNLT2B	chr3	196286219	196323240
DYNLT2B_chr3_196286219_196323240	0/0	t0002	197	1	0	0	1	0	0	copy fasta	DYNLT2B	chr3	196286219	196323240
DYNLT2_chr6_169735109_169756572	0/1	t0001	191	402	97	71	180	14	39	copy fasta	DYNLT2	chr6	169735109	169756572