JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
DYNLT2_chr6_169735109_169756572	0/0	t0002	193	15	1	1	11	1	1	copy fasta	DYNLT2	chr6	169735109	169756572
DYNLT2_chr6_169735109_169756572	0/0	t0003	191	1	0	0	1	0	0	copy fasta	DYNLT2	chr6	169735109	169756572
DYNLT2_chr6_169735109_169756572	0/0	t0004	191	1	0	0	0	1	0	copy fasta	DYNLT2	chr6	169735109	169756572
DYNLT3_chrX_37833836_37852571	1/1	t0001	1801	225	20	44	133	8	18	copy fasta	DYNLT3	chrX	37833836	37852571
DYNLT3_chrX_37833836_37852571	0/0	t0002	1802	33	15	8	4	0	6	copy fasta	DYNLT3	chrX	37833836	37852571
DYNLT3_chrX_37833836_37852571	0/0	t0003	1805	18	12	2	0	1	3	copy fasta	DYNLT3	chrX	37833836	37852571
DYNLT3_chrX_37833836_37852571	0/0	t0004	1805	14	14	0	0	0	0	copy fasta	DYNLT3	chrX	37833836	37852571
DYNLT3_chrX_37833836_37852571	0/0	t0005	1802	7	0	0	6	0	1	copy fasta	DYNLT3	chrX	37833836	37852571
DYNLT3_chrX_37833836_37852571	0/0	t0006	1805	6	6	0	0	0	0	copy fasta	DYNLT3	chrX	37833836	37852571
DYNLT3_chrX_37833836_37852571	0/0	t0007	1801	6	0	0	6	0	0	copy fasta	DYNLT3	chrX	37833836	37852571
DYNLT3_chrX_37833836_37852571	0/0	t0008	1805	4	4	0	0	0	0	copy fasta	DYNLT3	chrX	37833836	37852571
DYNLT3_chrX_37833836_37852571	0/0	t0009	1805	3	3	0	0	0	0	copy fasta	DYNLT3	chrX	37833836	37852571
DYNLT3_chrX_37833836_37852571	0/0	t0010	1801	3	0	1	0	2	0	copy fasta	DYNLT3	chrX	37833836	37852571
DYNLT3_chrX_37833836_37852571	0/0	t0011	1801	1	1	0	0	0	0	copy fasta	DYNLT3	chrX	37833836	37852571
DYNLT3_chrX_37833836_37852571	0/0	t0012	1795	1	0	0	1	0	0	copy fasta	DYNLT3	chrX	37833836	37852571
DYNLT3_chrX_37833836_37852571	0/0	t0013	1805	1	0	0	0	0	1	copy fasta	DYNLT3	chrX	37833836	37852571
DYNLT3_chrX_37833836_37852571	0/0	t0014	1801	1	0	0	0	0	1	copy fasta	DYNLT3	chrX	37833836	37852571
DYNLT3_chrX_37833836_37852571	0/0	t0015	1805	1	1	0	0	0	0	copy fasta	DYNLT3	chrX	37833836	37852571
DYNLT4_chr1_44800893_44812351	1/1	t0001	204	392	90	64	174	16	46	copy fasta	DYNLT4	chr1	44800893	44812351
DYNLT5_chr1_66747459_66784047	1/0	t0001	1723	219	31	49	113	6	19	copy fasta	DYNLT5	chr1	66747459	66784047
DYNLT5_chr1_66747459_66784047	0/0	t0002	1724	52	9	2	29	3	9	copy fasta	DYNLT5	chr1	66747459	66784047
DYNLT5_chr1_66747459_66784047	0/1	t0003	1724	37	1	12	16	2	5	copy fasta	DYNLT5	chr1	66747459	66784047
DYNLT5_chr1_66747459_66784047	0/0	t0004	1724	25	8	8	0	5	4	copy fasta	DYNLT5	chr1	66747459	66784047
DYNLT5_chr1_66747459_66784047	0/0	t0005	1723	18	18	0	0	0	0	copy fasta	DYNLT5	chr1	66747459	66784047
DYNLT5_chr1_66747459_66784047	0/0	t0006	1724	7	6	1	0	0	0	copy fasta	DYNLT5	chr1	66747459	66784047
DYNLT5_chr1_66747459_66784047	0/0	t0007	1723	7	7	0	0	0	0	copy fasta	DYNLT5	chr1	66747459	66784047
DYNLT5_chr1_66747459_66784047	0/0	t0008	1724	6	0	0	6	0	0	copy fasta	DYNLT5	chr1	66747459	66784047
DYNLT5_chr1_66747459_66784047	0/0	t0009	1723	6	6	0	0	0	0	copy fasta	DYNLT5	chr1	66747459	66784047
DYNLT5_chr1_66747459_66784047	0/0	t0010	1724	6	3	0	3	0	0	copy fasta	DYNLT5	chr1	66747459	66784047
DYNLT5_chr1_66747459_66784047	0/0	t0011	1723	3	0	3	0	0	0	copy fasta	DYNLT5	chr1	66747459	66784047
DYNLT5_chr1_66747459_66784047	0/0	t0012	1723	3	0	1	0	0	2	copy fasta	DYNLT5	chr1	66747459	66784047
DYNLT5_chr1_66747459_66784047	0/0	t0013	1723	2	0	0	2	0	0	copy fasta	DYNLT5	chr1	66747459	66784047
DYNLT5_chr1_66747459_66784047	0/0	t0014	1723	2	0	2	0	0	0	copy fasta	DYNLT5	chr1	66747459	66784047
DYNLT5_chr1_66747459_66784047	0/0	t0015	1724	1	1	0	0	0	0	copy fasta	DYNLT5	chr1	66747459	66784047
DYNLT5_chr1_66747459_66784047	0/0	t0016	1724	1	1	0	0	0	0	copy fasta	DYNLT5	chr1	66747459	66784047
DYNLT5_chr1_66747459_66784047	0/0	t0017	1724	1	1	0	0	0	0	copy fasta	DYNLT5	chr1	66747459	66784047
DYNLT5_chr1_66747459_66784047	0/0	t0018	1723	1	0	0	0	0	1	copy fasta	DYNLT5	chr1	66747459	66784047
DYNLT5_chr1_66747459_66784047	0/0	t0019	1723	1	0	0	0	0	1	copy fasta	DYNLT5	chr1	66747459	66784047
DYNLT5_chr1_66747459_66784047	0/0	t0020	1723	1	0	0	1	0	0	copy fasta	DYNLT5	chr1	66747459	66784047
DYNLT5_chr1_66747459_66784047	0/0	t0021	1724	1	0	0	0	0	1	copy fasta	DYNLT5	chr1	66747459	66784047
DYNLT5_chr1_66747459_66784047	0/0	t0022	1723	1	0	0	0	0	1	copy fasta	DYNLT5	chr1	66747459	66784047
DYNLT5_chr1_66747459_66784047	0/0	t0023	1723	1	0	0	0	0	1	copy fasta	DYNLT5	chr1	66747459	66784047
DYRK1A_chr21_37361773_37531358	0/0	t0001	14760	40	1	6	30	1	2	copy fasta	DYRK1A	chr21	37361773	37531358
DYRK1A_chr21_37361773_37531358	0/0	t0002	14786	31	0	1	21	1	8	copy fasta	DYRK1A	chr21	37361773	37531358
DYRK1A_chr21_37361773_37531358	0/0	t0003	14796	13	10	2	1	0	0	copy fasta	DYRK1A	chr21	37361773	37531358
DYRK1A_chr21_37361773_37531358	0/0	t0004	14796	9	2	1	6	0	0	copy fasta	DYRK1A	chr21	37361773	37531358
DYRK1A_chr21_37361773_37531358	0/0	t0005	14761	8	7	1	0	0	0	copy fasta	DYRK1A	chr21	37361773	37531358
DYRK1A_chr21_37361773_37531358	0/0	t0006	14761	7	0	1	6	0	0	copy fasta	DYRK1A	chr21	37361773	37531358
DYRK1A_chr21_37361773_37531358	0/0	t0007	14753	7	0	0	7	0	0	copy fasta	DYRK1A	chr21	37361773	37531358
DYRK1A_chr21_37361773_37531358	0/0	t0008	14758	6	0	0	0	2	4	copy fasta	DYRK1A	chr21	37361773	37531358