Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
AGK_chr7_141546410_141660244	0/0	t0007	2360	2	0	1	0	1	0	copy fasta	AGK	chr7	141546410	141660244
AGK_chr7_141546410_141660244	0/0	t0008	2360	2	2	0	0	0	0	copy fasta	AGK	chr7	141546410	141660244
AGK_chr7_141546410_141660244	0/0	t0009	2360	2	2	0	0	0	0	copy fasta	AGK	chr7	141546410	141660244
AGK_chr7_141546410_141660244	0/0	t0010	2364	1	1	0	0	0	0	copy fasta	AGK	chr7	141546410	141660244
AGK_chr7_141546410_141660244	0/0	t0011	2360	1	0	0	1	0	0	copy fasta	AGK	chr7	141546410	141660244
AGK_chr7_141546410_141660244	0/0	t0012	2360	1	0	1	0	0	0	copy fasta	AGK	chr7	141546410	141660244
AGK_chr7_141546410_141660244	0/0	t0013	2360	1	1	0	0	0	0	copy fasta	AGK	chr7	141546410	141660244
AGK_chr7_141546410_141660244	0/0	t0014	2360	1	0	0	0	0	1	copy fasta	AGK	chr7	141546410	141660244
AGK_chr7_141546410_141660244	0/0	t0015	2360	1	0	0	1	0	0	copy fasta	AGK	chr7	141546410	141660244
AGK_chr7_141546410_141660244	0/0	t0016	2360	1	0	0	0	0	1	copy fasta	AGK	chr7	141546410	141660244
AGK_chr7_141546410_141660244	0/0	t0017	2360	1	0	0	0	0	1	copy fasta	AGK	chr7	141546410	141660244
AGL_chr1_99845361_99929020	1/1	t0001	2493	106	27	23	42	2	10	copy fasta	AGL	chr1	99845361	99929020
AGL_chr1_99845361_99929020	0/0	t0002	2493	71	3	14	44	1	9	copy fasta	AGL	chr1	99845361	99929020
AGL_chr1_99845361_99929020	0/0	t0003	2493	31	2	5	11	0	13	copy fasta	AGL	chr1	99845361	99929020
AGL_chr1_99845361_99929020	0/0	t0004	2493	28	7	4	11	2	4	copy fasta	AGL	chr1	99845361	99929020
AGL_chr1_99845361_99929020	0/0	t0005	2493	24	0	5	18	0	1	copy fasta	AGL	chr1	99845361	99929020
AGL_chr1_99845361_99929020	0/0	t0006	2493	17	5	2	8	0	2	copy fasta	AGL	chr1	99845361	99929020
AGL_chr1_99845361_99929020	0/0	t0007	2493	8	8	0	0	0	0	copy fasta	AGL	chr1	99845361	99929020
AGL_chr1_99845361_99929020	0/0	t0008	2493	6	6	0	0	0	0	copy fasta	AGL	chr1	99845361	99929020
AGL_chr1_99845361_99929020	0/0	t0009	2493	3	3	0	0	0	0	copy fasta	AGL	chr1	99845361	99929020
AGL_chr1_99845361_99929020	0/0	t0010	2493	3	3	0	0	0	0	copy fasta	AGL	chr1	99845361	99929020
AGL_chr1_99845361_99929020	0/0	t0011	2493	3	3	0	0	0	0	copy fasta	AGL	chr1	99845361	99929020
AGL_chr1_99845361_99929020	0/0	t0012	2493	2	2	0	0	0	0	copy fasta	AGL	chr1	99845361	99929020
AGL_chr1_99845361_99929020	0/0	t0013	2493	2	2	0	0	0	0	copy fasta	AGL	chr1	99845361	99929020
AGL_chr1_99845361_99929020	0/0	t0014	2490	2	0	1	0	0	1	copy fasta	AGL	chr1	99845361	99929020
AGL_chr1_99845361_99929020	0/0	t0015	2493	2	0	1	1	0	0	copy fasta	AGL	chr1	99845361	99929020
AGL_chr1_99845361_99929020	0/0	t0016	2493	2	2	0	0	0	0	copy fasta	AGL	chr1	99845361	99929020
AGL_chr1_99845361_99929020	0/0	t0017	2493	2	0	2	0	0	0	copy fasta	AGL	chr1	99845361	99929020
AGL_chr1_99845361_99929020	0/0	t0018	2493	1	1	0	0	0	0	copy fasta	AGL	chr1	99845361	99929020
AGL_chr1_99845361_99929020	0/0	t0019	2493	1	0	1	0	0	0	copy fasta	AGL	chr1	99845361	99929020
AGL_chr1_99845361_99929020	0/0	t0020	2493	1	0	1	0	0	0	copy fasta	AGL	chr1	99845361	99929020
AGL_chr1_99845361_99929020	0/0	t0021	2493	1	0	1	0	0	0	copy fasta	AGL	chr1	99845361	99929020
AGL_chr1_99845361_99929020	0/0	t0022	2493	1	0	0	1	0	0	copy fasta	AGL	chr1	99845361	99929020
AGL_chr1_99845361_99929020	0/0	t0023	2490	1	0	0	0	1	0	copy fasta	AGL	chr1	99845361	99929020
AGMAT_chr1_15566699_15590051	1/1	t0001	2037	67	6	12	30	6	11	copy fasta	AGMAT	chr1	15566699	15590051
AGMAT_chr1_15566699_15590051	0/0	t0002	2039	54	2	16	30	1	5	copy fasta	AGMAT	chr1	15566699	15590051
AGMAT_chr1_15566699_15590051	0/0	t0003	2038	34	2	8	17	3	4	copy fasta	AGMAT	chr1	15566699	15590051
AGMAT_chr1_15566699_15590051	0/0	t0004	2040	26	0	4	15	2	5	copy fasta	AGMAT	chr1	15566699	15590051
AGMAT_chr1_15566699_15590051	0/0	t0005	2039	15	6	2	3	1	3	copy fasta	AGMAT	chr1	15566699	15590051
AGMAT_chr1_15566699_15590051	0/0	t0006	2040	13	8	3	0	0	2	copy fasta	AGMAT	chr1	15566699	15590051
AGMAT_chr1_15566699_15590051	0/0	t0007	2039	11	11	0	0	0	0	copy fasta	AGMAT	chr1	15566699	15590051
AGMAT_chr1_15566699_15590051	0/0	t0008	2039	11	0	4	5	0	2	copy fasta	AGMAT	chr1	15566699	15590051
AGMAT_chr1_15566699_15590051	0/0	t0009	2038	10	9	1	0	0	0	copy fasta	AGMAT	chr1	15566699	15590051
AGMAT_chr1_15566699_15590051	0/0	t0010	2038	8	2	3	0	1	2	copy fasta	AGMAT	chr1	15566699	15590051
AGMAT_chr1_15566699_15590051	0/0	t0011	2041	7	3	2	1	0	1	copy fasta	AGMAT	chr1	15566699	15590051
AGMAT_chr1_15566699_15590051	0/0	t0012	2038	7	0	2	4	0	1	copy fasta	AGMAT	chr1	15566699	15590051
AGMAT_chr1_15566699_15590051	0/0	t0013	2040	6	3	3	0	0	0	copy fasta	AGMAT	chr1	15566699	15590051
AGMAT_chr1_15566699_15590051	0/0	t0014	2041	5	0	1	4	0	0	copy fasta	AGMAT	chr1	15566699	15590051
AGMAT_chr1_15566699_15590051	0/0	t0015	2038	4	3	1	0	0	0	copy fasta	AGMAT	chr1	15566699	15590051
AGMAT_chr1_15566699_15590051	0/0	t0016	2039	4	0	0	4	0	0	copy fasta	AGMAT	chr1	15566699	15590051