JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
DYRK1A_chr21_37361773_37531358	0/0	t0109	14761	1	1	0	0	0	0	copy fasta	DYRK1A	chr21	37361773	37531358
DYRK1A_chr21_37361773_37531358	0/0	t0110	14760	1	0	0	1	0	0	copy fasta	DYRK1A	chr21	37361773	37531358
DYRK1A_chr21_37361773_37531358	0/0	t0111	14761	1	0	0	0	0	1	copy fasta	DYRK1A	chr21	37361773	37531358
DYRK1A_chr21_37361773_37531358	0/0	t0112	14761	1	1	0	0	0	0	copy fasta	DYRK1A	chr21	37361773	37531358
DYRK1A_chr21_37361773_37531358	0/0	t0113	14761	1	0	1	0	0	0	copy fasta	DYRK1A	chr21	37361773	37531358
DYRK1A_chr21_37361773_37531358	0/0	t0114	14760	1	0	0	0	0	1	copy fasta	DYRK1A	chr21	37361773	37531358
DYRK1A_chr21_37361773_37531358	0/0	t0115	14761	1	1	0	0	0	0	copy fasta	DYRK1A	chr21	37361773	37531358
DYRK1A_chr21_37361773_37531358	0/0	t0116	14785	1	0	0	0	0	1	copy fasta	DYRK1A	chr21	37361773	37531358
DYRK1A_chr21_37361773_37531358	0/0	t0117	14800	1	1	0	0	0	0	copy fasta	DYRK1A	chr21	37361773	37531358
DYRK1A_chr21_37361773_37531358	0/0	t0118	14785	1	0	1	0	0	0	copy fasta	DYRK1A	chr21	37361773	37531358
DYRK1A_chr21_37361773_37531358	0/0	t0119	14796	1	1	0	0	0	0	copy fasta	DYRK1A	chr21	37361773	37531358
DYRK1A_chr21_37361773_37531358	0/0	t0120	14797	1	0	1	0	0	0	copy fasta	DYRK1A	chr21	37361773	37531358
DYRK1A_chr21_37361773_37531358	0/0	t0121	14796	1	1	0	0	0	0	copy fasta	DYRK1A	chr21	37361773	37531358
DYRK1A_chr21_37361773_37531358	0/0	t0122	14801	1	1	0	0	0	0	copy fasta	DYRK1A	chr21	37361773	37531358
DYRK1A_chr21_37361773_37531358	0/0	t0123	14796	1	0	0	0	0	1	copy fasta	DYRK1A	chr21	37361773	37531358
DYRK1A_chr21_37361773_37531358	0/0	t0124	14796	1	0	0	1	0	0	copy fasta	DYRK1A	chr21	37361773	37531358
DYRK1A_chr21_37361773_37531358	0/0	t0125	14796	1	0	0	1	0	0	copy fasta	DYRK1A	chr21	37361773	37531358
DYRK1A_chr21_37361773_37531358	0/0	t0126	14786	1	0	0	0	1	0	copy fasta	DYRK1A	chr21	37361773	37531358
DYRK1A_chr21_37361773_37531358	0/0	t0127	14786	1	0	0	1	0	0	copy fasta	DYRK1A	chr21	37361773	37531358
DYRK1A_chr21_37361773_37531358	0/0	t0128	14787	1	0	0	1	0	0	copy fasta	DYRK1A	chr21	37361773	37531358
DYRK1A_chr21_37361773_37531358	0/0	t0129	14787	1	0	0	1	0	0	copy fasta	DYRK1A	chr21	37361773	37531358
DYRK1A_chr21_37361773_37531358	0/0	t0130	14796	1	1	0	0	0	0	copy fasta	DYRK1A	chr21	37361773	37531358
DYRK1A_chr21_37361773_37531358	0/0	t0131	14786	1	0	0	1	0	0	copy fasta	DYRK1A	chr21	37361773	37531358
DYRK1A_chr21_37361773_37531358	0/0	t0132	14782	1	0	1	0	0	0	copy fasta	DYRK1A	chr21	37361773	37531358
DYRK1A_chr21_37361773_37531358	0/0	t0133	14786	1	1	0	0	0	0	copy fasta	DYRK1A	chr21	37361773	37531358
DYRK1A_chr21_37361773_37531358	0/0	t0134	14786	1	0	0	0	1	0	copy fasta	DYRK1A	chr21	37361773	37531358
DYRK1A_chr21_37361773_37531358	0/0	t0135	14797	1	0	0	1	0	0	copy fasta	DYRK1A	chr21	37361773	37531358
DYRK1A_chr21_37361773_37531358	0/0	t0136	14786	1	0	0	0	0	1	copy fasta	DYRK1A	chr21	37361773	37531358
DYRK1A_chr21_37361773_37531358	0/0	t0137	14792	1	1	0	0	0	0	copy fasta	DYRK1A	chr21	37361773	37531358
DYRK1A_chr21_37361773_37531358	0/0	t0138	14800	1	1	0	0	0	0	copy fasta	DYRK1A	chr21	37361773	37531358
DYRK1A_chr21_37361773_37531358	0/0	t0139	14797	1	0	0	0	0	1	copy fasta	DYRK1A	chr21	37361773	37531358
DYRK1A_chr21_37361773_37531358	0/0	t0140	14787	1	0	1	0	0	0	copy fasta	DYRK1A	chr21	37361773	37531358
DYRK1A_chr21_37361773_37531358	0/0	t0141	14788	1	0	0	0	0	1	copy fasta	DYRK1A	chr21	37361773	37531358
DYRK1A_chr21_37361773_37531358	0/0	t0142	14796	1	1	0	0	0	0	copy fasta	DYRK1A	chr21	37361773	37531358
DYRK1A_chr21_37361773_37531358	0/0	t0143	14796	1	1	0	0	0	0	copy fasta	DYRK1A	chr21	37361773	37531358
DYRK1A_chr21_37361773_37531358	0/0	t0144	14753	1	0	0	1	0	0	copy fasta	DYRK1A	chr21	37361773	37531358
DYRK1A_chr21_37361773_37531358	0/0	t0145	14753	1	0	0	1	0	0	copy fasta	DYRK1A	chr21	37361773	37531358
DYRK1A_chr21_37361773_37531358	0/0	t0146	14757	1	0	0	1	0	0	copy fasta	DYRK1A	chr21	37361773	37531358
DYRK1A_chr21_37361773_37531358	0/0	t0147	14754	1	0	0	1	0	0	copy fasta	DYRK1A	chr21	37361773	37531358
DYRK1A_chr21_37361773_37531358	0/0	t0148	14753	1	0	0	1	0	0	copy fasta	DYRK1A	chr21	37361773	37531358
DYRK1A_chr21_37361773_37531358	0/0	t0149	14753	1	0	1	0	0	0	copy fasta	DYRK1A	chr21	37361773	37531358
DYRK1A_chr21_37361773_37531358	0/0	t0150	14754	1	1	0	0	0	0	copy fasta	DYRK1A	chr21	37361773	37531358
DYRK1A_chr21_37361773_37531358	0/0	t0151	14754	1	0	0	0	1	0	copy fasta	DYRK1A	chr21	37361773	37531358
DYRK1A_chr21_37361773_37531358	0/0	t0152	14755	1	0	1	0	0	0	copy fasta	DYRK1A	chr21	37361773	37531358
DYRK1A_chr21_37361773_37531358	0/0	t0153	14752	1	0	1	0	0	0	copy fasta	DYRK1A	chr21	37361773	37531358
DYRK1A_chr21_37361773_37531358	0/0	t0154	14762	1	0	0	0	0	1	copy fasta	DYRK1A	chr21	37361773	37531358
DYRK1A_chr21_37361773_37531358	0/0	t0155	14758	1	1	0	0	0	0	copy fasta	DYRK1A	chr21	37361773	37531358
DYRK1A_chr21_37361773_37531358	0/0	t0156	14760	1	0	0	1	0	0	copy fasta	DYRK1A	chr21	37361773	37531358
DYRK1A_chr21_37361773_37531358	0/0	t0157	14777	1	0	1	0	0	0	copy fasta	DYRK1A	chr21	37361773	37531358
DYRK1A_chr21_37361773_37531358	0/0	t0158	14778	1	1	0	0	0	0	copy fasta	DYRK1A	chr21	37361773	37531358