JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
DYRK1A_chr21_37361773_37531358	0/0	t0159	14760	1	0	0	0	0	1	copy fasta	DYRK1A	chr21	37361773	37531358
DYRK1A_chr21_37361773_37531358	0/0	t0160	14759	1	0	0	1	0	0	copy fasta	DYRK1A	chr21	37361773	37531358
DYRK1A_chr21_37361773_37531358	0/0	t0161	14760	1	1	0	0	0	0	copy fasta	DYRK1A	chr21	37361773	37531358
DYRK1A_chr21_37361773_37531358	0/0	t0162	14761	1	0	0	0	0	1	copy fasta	DYRK1A	chr21	37361773	37531358
DYRK1A_chr21_37361773_37531358	0/0	t0163	14761	1	1	0	0	0	0	copy fasta	DYRK1A	chr21	37361773	37531358
DYRK1A_chr21_37361773_37531358	0/0	t0164	14762	1	0	1	0	0	0	copy fasta	DYRK1A	chr21	37361773	37531358
DYRK1A_chr21_37361773_37531358	0/0	t0165	14786	1	0	0	0	0	1	copy fasta	DYRK1A	chr21	37361773	37531358
DYRK1A_chr21_37361773_37531358	0/0	t0166	14760	1	1	0	0	0	0	copy fasta	DYRK1A	chr21	37361773	37531358
DYRK1A_chr21_37361773_37531358	0/0	t0167	14760	1	1	0	0	0	0	copy fasta	DYRK1A	chr21	37361773	37531358
DYRK1A_chr21_37361773_37531358	0/0	t0168	14760	1	1	0	0	0	0	copy fasta	DYRK1A	chr21	37361773	37531358
DYRK1A_chr21_37361773_37531358	0/0	t0169	14761	1	1	0	0	0	0	copy fasta	DYRK1A	chr21	37361773	37531358
DYRK1A_chr21_37361773_37531358	0/0	t0170	14762	1	1	0	0	0	0	copy fasta	DYRK1A	chr21	37361773	37531358
DYRK1A_chr21_37361773_37531358	0/0	t0171	14762	1	1	0	0	0	0	copy fasta	DYRK1A	chr21	37361773	37531358
DYRK1A_chr21_37361773_37531358	0/0	t0172	14792	1	1	0	0	0	0	copy fasta	DYRK1A	chr21	37361773	37531358
DYRK1B_chr19_39820350_39839162	1/1	t0001	607	369	92	79	143	16	37	copy fasta	DYRK1B	chr19	39820350	39839162
DYRK1B_chr19_39820350_39839162	0/0	t0002	607	1	0	1	0	0	0	copy fasta	DYRK1B	chr19	39820350	39839162
DYRK1B_chr19_39820350_39839162	0/0	t0003	607	1	0	0	0	0	1	copy fasta	DYRK1B	chr19	39820350	39839162
DYRK1B_chr19_39820350_39839162	0/0	t0004	607	1	0	0	1	0	0	copy fasta	DYRK1B	chr19	39820350	39839162
DYRK2_chr12_67643745_67670406	0/0	t0001	7079	89	9	17	55	2	6	copy fasta	DYRK2	chr12	67643745	67670406
DYRK2_chr12_67643745_67670406	0/1	t0002	7079	85	6	25	41	4	8	copy fasta	DYRK2	chr12	67643745	67670406
DYRK2_chr12_67643745_67670406	0/0	t0003	7082	79	8	15	37	5	14	copy fasta	DYRK2	chr12	67643745	67670406
DYRK2_chr12_67643745_67670406	0/0	t0004	7082	23	15	4	0	3	1	copy fasta	DYRK2	chr12	67643745	67670406
DYRK2_chr12_67643745_67670406	0/0	t0005	7081	11	11	0	0	0	0	copy fasta	DYRK2	chr12	67643745	67670406
DYRK2_chr12_67643745_67670406	0/0	t0006	7078	9	9	0	0	0	0	copy fasta	DYRK2	chr12	67643745	67670406
DYRK2_chr12_67643745_67670406	0/0	t0007	7079	8	0	0	8	0	0	copy fasta	DYRK2	chr12	67643745	67670406
DYRK2_chr12_67643745_67670406	0/0	t0008	7082	6	0	0	6	0	0	copy fasta	DYRK2	chr12	67643745	67670406
DYRK2_chr12_67643745_67670406	0/0	t0009	7082	6	0	0	6	0	0	copy fasta	DYRK2	chr12	67643745	67670406
DYRK2_chr12_67643745_67670406	0/0	t0010	7082	5	5	0	0	0	0	copy fasta	DYRK2	chr12	67643745	67670406
DYRK2_chr12_67643745_67670406	0/0	t0011	7079	4	0	0	4	0	0	copy fasta	DYRK2	chr12	67643745	67670406
DYRK2_chr12_67643745_67670406	0/0	t0012	7082	3	0	1	2	0	0	copy fasta	DYRK2	chr12	67643745	67670406
DYRK2_chr12_67643745_67670406	0/0	t0013	7080	3	0	0	3	0	0	copy fasta	DYRK2	chr12	67643745	67670406
DYRK2_chr12_67643745_67670406	0/0	t0014	7082	3	0	0	3	0	0	copy fasta	DYRK2	chr12	67643745	67670406
DYRK2_chr12_67643745_67670406	0/0	t0015	7081	3	3	0	0	0	0	copy fasta	DYRK2	chr12	67643745	67670406
DYRK2_chr12_67643745_67670406	0/0	t0016	7082	3	3	0	0	0	0	copy fasta	DYRK2	chr12	67643745	67670406
DYRK2_chr12_67643745_67670406	0/0	t0017	7081	3	3	0	0	0	0	copy fasta	DYRK2	chr12	67643745	67670406
DYRK2_chr12_67643745_67670406	0/0	t0018	7079	2	0	2	0	0	0	copy fasta	DYRK2	chr12	67643745	67670406
DYRK2_chr12_67643745_67670406	0/0	t0019	7079	2	0	0	2	0	0	copy fasta	DYRK2	chr12	67643745	67670406
DYRK2_chr12_67643745_67670406	0/0	t0020	7079	2	0	0	2	0	0	copy fasta	DYRK2	chr12	67643745	67670406
DYRK2_chr12_67643745_67670406	0/0	t0021	7082	2	0	1	0	0	1	copy fasta	DYRK2	chr12	67643745	67670406
DYRK2_chr12_67643745_67670406	0/0	t0022	7081	2	2	0	0	0	0	copy fasta	DYRK2	chr12	67643745	67670406
DYRK2_chr12_67643745_67670406	0/0	t0023	7079	2	2	0	0	0	0	copy fasta	DYRK2	chr12	67643745	67670406
DYRK2_chr12_67643745_67670406	0/0	t0024	7081	2	2	0	0	0	0	copy fasta	DYRK2	chr12	67643745	67670406
DYRK2_chr12_67643745_67670406	0/0	t0025	7081	2	1	1	0	0	0	copy fasta	DYRK2	chr12	67643745	67670406
DYRK2_chr12_67643745_67670406	0/0	t0026	7079	1	0	1	0	0	0	copy fasta	DYRK2	chr12	67643745	67670406
DYRK2_chr12_67643745_67670406	0/0	t0027	7079	1	1	0	0	0	0	copy fasta	DYRK2	chr12	67643745	67670406
DYRK2_chr12_67643745_67670406	0/0	t0028	7079	1	0	0	1	0	0	copy fasta	DYRK2	chr12	67643745	67670406
DYRK2_chr12_67643745_67670406	0/0	t0029	7079	1	0	0	0	0	1	copy fasta	DYRK2	chr12	67643745	67670406
DYRK2_chr12_67643745_67670406	0/0	t0030	7082	1	0	0	1	0	0	copy fasta	DYRK2	chr12	67643745	67670406
DYRK2_chr12_67643745_67670406	0/0	t0031	7079	1	0	1	0	0	0	copy fasta	DYRK2	chr12	67643745	67670406
DYRK2_chr12_67643745_67670406	0/0	t0032	7079	1	0	0	1	0	0	copy fasta	DYRK2	chr12	67643745	67670406