JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
DYRK2_chr12_67643745_67670406	0/0	t0033	7082	1	0	0	1	0	0	copy fasta	DYRK2	chr12	67643745	67670406
DYRK2_chr12_67643745_67670406	0/0	t0034	7082	1	0	0	0	0	1	copy fasta	DYRK2	chr12	67643745	67670406
DYRK2_chr12_67643745_67670406	0/0	t0035	7079	1	0	0	1	0	0	copy fasta	DYRK2	chr12	67643745	67670406
DYRK2_chr12_67643745_67670406	0/0	t0036	7079	1	0	0	1	0	0	copy fasta	DYRK2	chr12	67643745	67670406
DYRK2_chr12_67643745_67670406	0/0	t0037	7079	1	0	0	1	0	0	copy fasta	DYRK2	chr12	67643745	67670406
DYRK2_chr12_67643745_67670406	0/0	t0038	7079	1	0	0	1	0	0	copy fasta	DYRK2	chr12	67643745	67670406
DYRK2_chr12_67643745_67670406	0/0	t0039	7082	1	0	0	1	0	0	copy fasta	DYRK2	chr12	67643745	67670406
DYRK2_chr12_67643745_67670406	0/0	t0040	7082	1	0	0	1	0	0	copy fasta	DYRK2	chr12	67643745	67670406
DYRK2_chr12_67643745_67670406	0/0	t0041	7080	1	0	0	1	0	0	copy fasta	DYRK2	chr12	67643745	67670406
DYRK2_chr12_67643745_67670406	0/0	t0042	7081	1	0	0	1	0	0	copy fasta	DYRK2	chr12	67643745	67670406
DYRK2_chr12_67643745_67670406	0/0	t0043	7080	1	0	0	1	0	0	copy fasta	DYRK2	chr12	67643745	67670406
DYRK2_chr12_67643745_67670406	0/0	t0044	7081	1	1	0	0	0	0	copy fasta	DYRK2	chr12	67643745	67670406
DYRK2_chr12_67643745_67670406	0/0	t0045	7081	1	0	1	0	0	0	copy fasta	DYRK2	chr12	67643745	67670406
DYRK2_chr12_67643745_67670406	0/0	t0046	7082	1	0	1	0	0	0	copy fasta	DYRK2	chr12	67643745	67670406
DYRK2_chr12_67643745_67670406	0/0	t0047	7082	1	0	0	0	0	1	copy fasta	DYRK2	chr12	67643745	67670406
DYRK2_chr12_67643745_67670406	1/0	t0048	7083	1	0	0	0	0	0	copy fasta	DYRK2	chr12	67643745	67670406
DYRK2_chr12_67643745_67670406	0/0	t0049	7082	1	0	0	1	0	0	copy fasta	DYRK2	chr12	67643745	67670406
DYRK2_chr12_67643745_67670406	0/0	t0050	7083	1	1	0	0	0	0	copy fasta	DYRK2	chr12	67643745	67670406
DYRK2_chr12_67643745_67670406	0/0	t0051	7081	1	1	0	0	0	0	copy fasta	DYRK2	chr12	67643745	67670406
DYRK2_chr12_67643745_67670406	0/0	t0052	7082	1	1	0	0	0	0	copy fasta	DYRK2	chr12	67643745	67670406
DYRK2_chr12_67643745_67670406	0/0	t0053	7079	1	0	0	0	0	1	copy fasta	DYRK2	chr12	67643745	67670406
DYRK2_chr12_67643745_67670406	0/0	t0054	7079	1	0	0	1	0	0	copy fasta	DYRK2	chr12	67643745	67670406
DYRK2_chr12_67643745_67670406	0/0	t0055	7081	1	1	0	0	0	0	copy fasta	DYRK2	chr12	67643745	67670406
DYRK2_chr12_67643745_67670406	0/0	t0056	7079	1	1	0	0	0	0	copy fasta	DYRK2	chr12	67643745	67670406
DYRK3_chr1_206630536_206660158	1/1	t0001	6362	231	36	40	123	8	22	copy fasta	DYRK3	chr1	206630536	206660158
DYRK3_chr1_206630536_206660158	0/0	t0002	6359	51	5	9	18	9	10	copy fasta	DYRK3	chr1	206630536	206660158
DYRK3_chr1_206630536_206660158	0/0	t0003	6362	36	3	7	26	0	0	copy fasta	DYRK3	chr1	206630536	206660158
DYRK3_chr1_206630536_206660158	0/0	t0004	6359	16	6	6	0	1	3	copy fasta	DYRK3	chr1	206630536	206660158
DYRK3_chr1_206630536_206660158	0/0	t0005	6362	8	8	0	0	0	0	copy fasta	DYRK3	chr1	206630536	206660158
DYRK3_chr1_206630536_206660158	0/0	t0006	6362	6	5	1	0	0	0	copy fasta	DYRK3	chr1	206630536	206660158
DYRK3_chr1_206630536_206660158	0/0	t0007	6357	6	0	6	0	0	0	copy fasta	DYRK3	chr1	206630536	206660158
DYRK3_chr1_206630536_206660158	0/0	t0008	6362	3	3	0	0	0	0	copy fasta	DYRK3	chr1	206630536	206660158
DYRK3_chr1_206630536_206660158	0/0	t0009	6362	3	3	0	0	0	0	copy fasta	DYRK3	chr1	206630536	206660158
DYRK3_chr1_206630536_206660158	0/0	t0010	6362	3	3	0	0	0	0	copy fasta	DYRK3	chr1	206630536	206660158
DYRK3_chr1_206630536_206660158	0/0	t0011	6362	3	3	0	0	0	0	copy fasta	DYRK3	chr1	206630536	206660158
DYRK3_chr1_206630536_206660158	0/0	t0012	6362	2	2	0	0	0	0	copy fasta	DYRK3	chr1	206630536	206660158
DYRK3_chr1_206630536_206660158	0/0	t0013	6362	2	1	0	0	0	1	copy fasta	DYRK3	chr1	206630536	206660158
DYRK3_chr1_206630536_206660158	0/0	t0014	6362	2	0	0	2	0	0	copy fasta	DYRK3	chr1	206630536	206660158
DYRK3_chr1_206630536_206660158	0/0	t0015	6362	2	0	2	0	0	0	copy fasta	DYRK3	chr1	206630536	206660158
DYRK3_chr1_206630536_206660158	0/0	t0016	6362	1	1	0	0	0	0	copy fasta	DYRK3	chr1	206630536	206660158
DYRK3_chr1_206630536_206660158	0/0	t0017	6362	1	1	0	0	0	0	copy fasta	DYRK3	chr1	206630536	206660158
DYRK3_chr1_206630536_206660158	0/0	t0018	6362	1	1	0	0	0	0	copy fasta	DYRK3	chr1	206630536	206660158
DYRK3_chr1_206630536_206660158	0/0	t0019	6362	1	1	0	0	0	0	copy fasta	DYRK3	chr1	206630536	206660158
DYRK3_chr1_206630536_206660158	0/0	t0020	6362	1	0	0	1	0	0	copy fasta	DYRK3	chr1	206630536	206660158
DYRK3_chr1_206630536_206660158	0/0	t0021	6362	1	1	0	0	0	0	copy fasta	DYRK3	chr1	206630536	206660158
DYRK3_chr1_206630536_206660158	0/0	t0022	6362	1	1	0	0	0	0	copy fasta	DYRK3	chr1	206630536	206660158
DYRK3_chr1_206630536_206660158	0/0	t0023	6362	1	0	0	1	0	0	copy fasta	DYRK3	chr1	206630536	206660158
DYRK3_chr1_206630536_206660158	0/0	t0024	6362	1	0	1	0	0	0	copy fasta	DYRK3	chr1	206630536	206660158
DYRK3_chr1_206630536_206660158	0/0	t0025	6362	1	0	0	1	0	0	copy fasta	DYRK3	chr1	206630536	206660158
DYRK3_chr1_206630536_206660158	0/0	t0026	6362	1	1	0	0	0	0	copy fasta	DYRK3	chr1	206630536	206660158