JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
DYRK3_chr1_206630536_206660158	0/0	t0027	6362	1	0	1	0	0	0	copy fasta	DYRK3	chr1	206630536	206660158
DYRK3_chr1_206630536_206660158	0/0	t0028	6362	1	1	0	0	0	0	copy fasta	DYRK3	chr1	206630536	206660158
DYRK3_chr1_206630536_206660158	0/0	t0029	6362	1	1	0	0	0	0	copy fasta	DYRK3	chr1	206630536	206660158
DYRK3_chr1_206630536_206660158	0/0	t0030	6362	1	0	0	1	0	0	copy fasta	DYRK3	chr1	206630536	206660158
DYRK3_chr1_206630536_206660158	0/0	t0031	6362	1	0	0	1	0	0	copy fasta	DYRK3	chr1	206630536	206660158
DYRK3_chr1_206630536_206660158	0/0	t0032	6359	1	0	0	0	0	1	copy fasta	DYRK3	chr1	206630536	206660158
DYRK3_chr1_206630536_206660158	0/0	t0033	6359	1	1	0	0	0	0	copy fasta	DYRK3	chr1	206630536	206660158
DYRK3_chr1_206630536_206660158	0/0	t0034	6362	1	1	0	0	0	0	copy fasta	DYRK3	chr1	206630536	206660158
DYRK3_chr1_206630536_206660158	0/0	t0035	6362	1	1	0	0	0	0	copy fasta	DYRK3	chr1	206630536	206660158
DYRK3_chr1_206630536_206660158	0/0	t0036	6362	1	0	0	0	0	1	copy fasta	DYRK3	chr1	206630536	206660158
DYRK3_chr1_206630536_206660158	0/0	t0037	6362	1	0	1	0	0	0	copy fasta	DYRK3	chr1	206630536	206660158
DYRK4_chr12_4557208_4618875	1/1	t0001	161	414	94	60	204	14	40	copy fasta	DYRK4	chr12	4557208	4618875
DYSF_chr2_71448561_71691763	1/1	t0001	710	132	46	31	32	5	16	copy fasta	DYSF	chr2	71448561	71691763
DYSF_chr2_71448561_71691763	0/0	t0002	710	50	21	2	20	1	6	copy fasta	DYSF	chr2	71448561	71691763
DYSF_chr2_71448561_71691763	0/0	t0003	710	5	4	1	0	0	0	copy fasta	DYSF	chr2	71448561	71691763
DYSF_chr2_71448561_71691763	0/0	t0004	710	3	3	0	0	0	0	copy fasta	DYSF	chr2	71448561	71691763
DYSF_chr2_71448561_71691763	0/0	t0005	710	1	1	0	0	0	0	copy fasta	DYSF	chr2	71448561	71691763
DYSF_chr2_71448561_71691763	0/0	t0006	710	1	1	0	0	0	0	copy fasta	DYSF	chr2	71448561	71691763
DYSF_chr2_71461699_71691763	1/1	t0001	416	144	58	34	29	5	16	copy fasta	DYSF	chr2	71461699	71691763
DYSF_chr2_71461699_71691763	0/0	t0002	416	47	8	4	26	1	8	copy fasta	DYSF	chr2	71461699	71691763
DYSF_chr2_71461699_71691763	0/0	t0003	416	6	6	0	0	0	0	copy fasta	DYSF	chr2	71461699	71691763
DYSF_chr2_71461699_71691763	0/0	t0004	416	4	4	0	0	0	0	copy fasta	DYSF	chr2	71461699	71691763
DYSF_chr2_71461699_71691763	0/0	t0005	416	4	4	0	0	0	0	copy fasta	DYSF	chr2	71461699	71691763
DYSF_chr2_71461699_71691763	0/0	t0006	416	1	0	1	0	0	0	copy fasta	DYSF	chr2	71461699	71691763
DYSF_chr2_71461699_71691763	0/0	t0007	416	1	0	0	1	0	0	copy fasta	DYSF	chr2	71461699	71691763
DYSF_chr2_71461699_71691763	0/0	t0008	416	1	0	1	0	0	0	copy fasta	DYSF	chr2	71461699	71691763
DYTN_chr2_206646621_206723396	1/1	t0001	315	380	90	72	162	16	38	copy fasta	DYTN	chr2	206646621	206723396
DYTN_chr2_206646621_206723396	0/0	t0002	315	1	1	0	0	0	0	copy fasta	DYTN	chr2	206646621	206723396
DYTN_chr2_206646621_206723396	0/0	t0003	315	1	1	0	0	0	0	copy fasta	DYTN	chr2	206646621	206723396
DZANK1_chr20_18378367_18472030	0/0	t0001	1087	205	30	42	110	9	14	copy fasta	DZANK1	chr20	18378367	18472030
DZANK1_chr20_18378367_18472030	0/0	t0002	1087	76	18	19	21	2	16	copy fasta	DZANK1	chr20	18378367	18472030
DZANK1_chr20_18378367_18472030	0/0	t0003	1087	45	10	5	21	4	5	copy fasta	DZANK1	chr20	18378367	18472030
DZANK1_chr20_18378367_18472030	0/0	t0004	1087	11	9	2	0	0	0	copy fasta	DZANK1	chr20	18378367	18472030
DZANK1_chr20_18378367_18472030	0/0	t0005	1079	8	2	0	5	0	1	copy fasta	DZANK1	chr20	18378367	18472030
DZANK1_chr20_18378367_18472030	0/0	t0006	1087	6	6	0	0	0	0	copy fasta	DZANK1	chr20	18378367	18472030
DZANK1_chr20_18378367_18472030	0/0	t0007	1087	5	0	2	3	0	0	copy fasta	DZANK1	chr20	18378367	18472030
DZANK1_chr20_18378367_18472030	1/0	t0008	1087	5	4	0	0	0	0	copy fasta	DZANK1	chr20	18378367	18472030
DZANK1_chr20_18378367_18472030	0/1	t0009	1087	4	3	0	0	0	0	copy fasta	DZANK1	chr20	18378367	18472030
DZANK1_chr20_18378367_18472030	0/0	t0010	1087	3	3	0	0	0	0	copy fasta	DZANK1	chr20	18378367	18472030
DZANK1_chr20_18378367_18472030	0/0	t0011	1087	2	2	0	0	0	0	copy fasta	DZANK1	chr20	18378367	18472030
DZANK1_chr20_18378367_18472030	0/0	t0012	1087	1	0	1	0	0	0	copy fasta	DZANK1	chr20	18378367	18472030
DZANK1_chr20_18378367_18472030	0/0	t0013	1087	1	1	0	0	0	0	copy fasta	DZANK1	chr20	18378367	18472030
DZANK1_chr20_18378367_18472030	0/0	t0014	1087	1	0	1	0	0	0	copy fasta	DZANK1	chr20	18378367	18472030
DZANK1_chr20_18378367_18472030	0/0	t0015	1087	1	0	0	0	1	0	copy fasta	DZANK1	chr20	18378367	18472030
DZIP1L_chr3_138056990_138120608	1/1	t0001	1189	140	35	19	60	6	18	copy fasta	DZIP1L	chr3	138056990	138120608
DZIP1L_chr3_138056990_138120608	0/0	t0002	1189	118	11	20	69	3	15	copy fasta	DZIP1L	chr3	138056990	138120608
DZIP1L_chr3_138056990_138120608	0/0	t0003	1189	24	19	5	0	0	0	copy fasta	DZIP1L	chr3	138056990	138120608
DZIP1L_chr3_138056990_138120608	0/0	t0004	1189	7	7	0	0	0	0	copy fasta	DZIP1L	chr3	138056990	138120608
DZIP1L_chr3_138056990_138120608	0/0	t0005	1189	6	5	1	0	0	0	copy fasta	DZIP1L	chr3	138056990	138120608
DZIP1L_chr3_138056990_138120608	0/0	t0006	1189	4	4	0	0	0	0	copy fasta	DZIP1L	chr3	138056990	138120608