JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
DZIP1L_chr3_138056990_138120608	0/0	t0007	1189	3	0	0	3	0	0	copy fasta	DZIP1L	chr3	138056990	138120608
DZIP1L_chr3_138056990_138120608	0/0	t0008	1189	3	0	1	0	1	1	copy fasta	DZIP1L	chr3	138056990	138120608
DZIP1L_chr3_138056990_138120608	0/0	t0009	1189	2	2	0	0	0	0	copy fasta	DZIP1L	chr3	138056990	138120608
DZIP1L_chr3_138056990_138120608	0/0	t0010	1189	1	0	1	0	0	0	copy fasta	DZIP1L	chr3	138056990	138120608
DZIP1L_chr3_138056990_138120608	0/0	t0011	1189	1	1	0	0	0	0	copy fasta	DZIP1L	chr3	138056990	138120608
DZIP1L_chr3_138056990_138120608	0/0	t0012	1189	1	1	0	0	0	0	copy fasta	DZIP1L	chr3	138056990	138120608
DZIP1L_chr3_138056990_138120608	0/0	t0013	1189	1	0	1	0	0	0	copy fasta	DZIP1L	chr3	138056990	138120608
DZIP1L_chr3_138056990_138120608	0/0	t0014	1189	1	1	0	0	0	0	copy fasta	DZIP1L	chr3	138056990	138120608
DZIP1_chr13_95573202_95649706	1/1	t0001	4888	142	4	25	90	10	11	copy fasta	DZIP1	chr13	95573202	95649706
DZIP1_chr13_95573202_95649706	0/0	t0002	4888	112	33	18	41	6	14	copy fasta	DZIP1	chr13	95573202	95649706
DZIP1_chr13_95573202_95649706	0/0	t0003	4888	22	1	9	10	0	2	copy fasta	DZIP1	chr13	95573202	95649706
DZIP1_chr13_95573202_95649706	0/0	t0004	4888	17	16	1	0	0	0	copy fasta	DZIP1	chr13	95573202	95649706
DZIP1_chr13_95573202_95649706	0/0	t0005	4888	8	0	2	6	0	0	copy fasta	DZIP1	chr13	95573202	95649706
DZIP1_chr13_95573202_95649706	0/0	t0006	4889	8	7	1	0	0	0	copy fasta	DZIP1	chr13	95573202	95649706
DZIP1_chr13_95573202_95649706	0/0	t0007	4888	6	3	0	3	0	0	copy fasta	DZIP1	chr13	95573202	95649706
DZIP1_chr13_95573202_95649706	0/0	t0008	4888	6	0	0	6	0	0	copy fasta	DZIP1	chr13	95573202	95649706
DZIP1_chr13_95573202_95649706	0/0	t0009	4888	5	0	0	5	0	0	copy fasta	DZIP1	chr13	95573202	95649706
DZIP1_chr13_95573202_95649706	0/0	t0010	4888	4	0	0	4	0	0	copy fasta	DZIP1	chr13	95573202	95649706
DZIP1_chr13_95573202_95649706	0/0	t0011	4888	4	4	0	0	0	0	copy fasta	DZIP1	chr13	95573202	95649706
DZIP1_chr13_95573202_95649706	0/0	t0012	4889	4	1	0	3	0	0	copy fasta	DZIP1	chr13	95573202	95649706
DZIP1_chr13_95573202_95649706	0/0	t0013	4886	4	4	0	0	0	0	copy fasta	DZIP1	chr13	95573202	95649706
DZIP1_chr13_95573202_95649706	0/0	t0014	4888	4	3	0	0	0	1	copy fasta	DZIP1	chr13	95573202	95649706
DZIP1_chr13_95573202_95649706	0/0	t0015	4888	3	3	0	0	0	0	copy fasta	DZIP1	chr13	95573202	95649706
DZIP1_chr13_95573202_95649706	0/0	t0016	4888	3	0	0	3	0	0	copy fasta	DZIP1	chr13	95573202	95649706
DZIP1_chr13_95573202_95649706	0/0	t0017	4888	3	0	0	3	0	0	copy fasta	DZIP1	chr13	95573202	95649706
DZIP1_chr13_95573202_95649706	0/0	t0018	4889	3	0	0	2	0	1	copy fasta	DZIP1	chr13	95573202	95649706
DZIP1_chr13_95573202_95649706	0/0	t0019	4888	2	0	1	0	0	1	copy fasta	DZIP1	chr13	95573202	95649706
DZIP1_chr13_95573202_95649706	0/0	t0020	4888	2	0	0	0	0	2	copy fasta	DZIP1	chr13	95573202	95649706
DZIP1_chr13_95573202_95649706	0/0	t0021	4889	2	2	0	0	0	0	copy fasta	DZIP1	chr13	95573202	95649706
DZIP1_chr13_95573202_95649706	0/0	t0022	4888	1	0	0	1	0	0	copy fasta	DZIP1	chr13	95573202	95649706
DZIP1_chr13_95573202_95649706	0/0	t0023	4888	1	0	0	1	0	0	copy fasta	DZIP1	chr13	95573202	95649706
DZIP1_chr13_95573202_95649706	0/0	t0024	4889	1	0	0	1	0	0	copy fasta	DZIP1	chr13	95573202	95649706
DZIP1_chr13_95573202_95649706	0/0	t0025	4888	1	0	0	1	0	0	copy fasta	DZIP1	chr13	95573202	95649706
DZIP1_chr13_95573202_95649706	0/0	t0026	4888	1	1	0	0	0	0	copy fasta	DZIP1	chr13	95573202	95649706
DZIP1_chr13_95573202_95649706	0/0	t0027	4889	1	0	0	0	0	1	copy fasta	DZIP1	chr13	95573202	95649706
DZIP1_chr13_95573202_95649706	0/0	t0028	4888	1	0	1	0	0	0	copy fasta	DZIP1	chr13	95573202	95649706
DZIP1_chr13_95573202_95649706	0/0	t0029	4888	1	1	0	0	0	0	copy fasta	DZIP1	chr13	95573202	95649706
DZIP1_chr13_95573202_95649706	0/0	t0030	4888	1	1	0	0	0	0	copy fasta	DZIP1	chr13	95573202	95649706
DZIP1_chr13_95573202_95649706	0/0	t0031	4889	1	0	0	1	0	0	copy fasta	DZIP1	chr13	95573202	95649706
DZIP1_chr13_95573202_95649706	0/0	t0032	4889	1	1	0	0	0	0	copy fasta	DZIP1	chr13	95573202	95649706
DZIP1_chr13_95573202_95649706	0/0	t0033	4888	1	1	0	0	0	0	copy fasta	DZIP1	chr13	95573202	95649706
DZIP1_chr13_95573202_95649706	0/0	t0034	4889	1	1	0	0	0	0	copy fasta	DZIP1	chr13	95573202	95649706
DZIP1_chr13_95573202_95649706	0/0	t0035	4889	1	1	0	0	0	0	copy fasta	DZIP1	chr13	95573202	95649706
DZIP1_chr13_95573202_95649706	0/0	t0036	4888	1	0	0	1	0	0	copy fasta	DZIP1	chr13	95573202	95649706
DZIP1_chr13_95573202_95649706	0/0	t0037	4888	1	0	0	1	0	0	copy fasta	DZIP1	chr13	95573202	95649706
DZIP1_chr13_95573202_95649706	0/0	t0038	4843	1	0	0	0	0	1	copy fasta	DZIP1	chr13	95573202	95649706
DZIP1_chr13_95573202_95649706	0/0	t0039	4888	1	0	0	1	0	0	copy fasta	DZIP1	chr13	95573202	95649706
DZIP3_chr3_108584722_108699840	0/1	t0001	1678	280	68	58	108	10	35	copy fasta	DZIP3	chr3	108584722	108699840
DZIP3_chr3_108584722_108699840	0/0	t0002	1678	10	9	0	0	0	1	copy fasta	DZIP3	chr3	108584722	108699840
DZIP3_chr3_108584722_108699840	1/0	t0003	1678	6	4	1	0	0	0	copy fasta	DZIP3	chr3	108584722	108699840