JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
DZIP3_chr3_108584722_108699840	0/0	t0004	1678	5	4	1	0	0	0	copy fasta	DZIP3	chr3	108584722	108699840
DZIP3_chr3_108584722_108699840	0/0	t0005	1678	4	3	1	0	0	0	copy fasta	DZIP3	chr3	108584722	108699840
DZIP3_chr3_108584722_108699840	0/0	t0006	1678	3	0	0	0	0	3	copy fasta	DZIP3	chr3	108584722	108699840
DZIP3_chr3_108584722_108699840	0/0	t0007	1678	2	0	0	2	0	0	copy fasta	DZIP3	chr3	108584722	108699840
DZIP3_chr3_108584722_108699840	0/0	t0008	1678	1	1	0	0	0	0	copy fasta	DZIP3	chr3	108584722	108699840
DZIP3_chr3_108584722_108699840	0/0	t0009	1678	1	0	0	0	0	1	copy fasta	DZIP3	chr3	108584722	108699840
DZIP3_chr3_108584722_108699840	0/0	t0010	1678	1	1	0	0	0	0	copy fasta	DZIP3	chr3	108584722	108699840
DZIP3_chr3_108584722_108699840	0/0	t0011	1678	1	0	1	0	0	0	copy fasta	DZIP3	chr3	108584722	108699840
DZIP3_chr3_108584722_108699840	0/0	t0012	1678	1	1	0	0	0	0	copy fasta	DZIP3	chr3	108584722	108699840
DZIP3_chr3_108584722_108699840	0/0	t0013	1678	1	0	0	1	0	0	copy fasta	DZIP3	chr3	108584722	108699840
DZIP3_chr3_108584722_108699840	0/0	t0014	1678	1	0	0	1	0	0	copy fasta	DZIP3	chr3	108584722	108699840
DZIP3_chr3_108584722_108699840	0/0	t0015	1678	1	1	0	0	0	0	copy fasta	DZIP3	chr3	108584722	108699840
E2F1_chr20_33670477_33691385	1/1	t0001	1377	311	89	57	118	11	34	copy fasta	E2F1	chr20	33670477	33691385
E2F1_chr20_33670477_33691385	0/0	t0002	1377	51	3	3	39	3	3	copy fasta	E2F1	chr20	33670477	33691385
E2F1_chr20_33670477_33691385	0/0	t0003	1377	9	0	5	0	1	3	copy fasta	E2F1	chr20	33670477	33691385
E2F1_chr20_33670477_33691385	0/0	t0004	1377	3	0	0	0	2	1	copy fasta	E2F1	chr20	33670477	33691385
E2F1_chr20_33670477_33691385	0/0	t0005	1377	2	0	0	0	0	2	copy fasta	E2F1	chr20	33670477	33691385
E2F1_chr20_33670477_33691385	0/0	t0006	1377	1	1	0	0	0	0	copy fasta	E2F1	chr20	33670477	33691385
E2F1_chr20_33670477_33691385	0/0	t0007	1377	1	0	1	0	0	0	copy fasta	E2F1	chr20	33670477	33691385
E2F1_chr20_33670477_33691385	0/0	t0008	1377	1	0	0	0	1	0	copy fasta	E2F1	chr20	33670477	33691385
E2F1_chr20_33670477_33691385	0/0	t0009	1377	1	0	0	1	0	0	copy fasta	E2F1	chr20	33670477	33691385
E2F1_chr20_33670477_33691385	0/0	t0010	1377	1	1	0	0	0	0	copy fasta	E2F1	chr20	33670477	33691385
E2F1_chr20_33670477_33691385	0/0	t0011	1377	1	0	0	0	0	1	copy fasta	E2F1	chr20	33670477	33691385
E2F2_chr1_23501438_23536233	0/0	t0001	3884	129	2	28	84	3	12	copy fasta	E2F2	chr1	23501438	23536233
E2F2_chr1_23501438_23536233	1/0	t0002	3883	107	39	30	25	7	5	copy fasta	E2F2	chr1	23501438	23536233
E2F2_chr1_23501438_23536233	0/0	t0003	3883	69	0	9	45	1	14	copy fasta	E2F2	chr1	23501438	23536233
E2F2_chr1_23501438_23536233	0/0	t0004	3883	24	22	2	0	0	0	copy fasta	E2F2	chr1	23501438	23536233
E2F2_chr1_23501438_23536233	0/0	t0005	3883	18	16	2	0	0	0	copy fasta	E2F2	chr1	23501438	23536233
E2F2_chr1_23501438_23536233	0/0	t0006	3883	7	1	1	0	0	5	copy fasta	E2F2	chr1	23501438	23536233
E2F2_chr1_23501438_23536233	0/0	t0007	3883	7	0	0	7	0	0	copy fasta	E2F2	chr1	23501438	23536233
E2F2_chr1_23501438_23536233	0/0	t0008	3883	5	4	1	0	0	0	copy fasta	E2F2	chr1	23501438	23536233
E2F2_chr1_23501438_23536233	0/0	t0009	3883	4	4	0	0	0	0	copy fasta	E2F2	chr1	23501438	23536233
E2F2_chr1_23501438_23536233	0/0	t0010	3884	3	0	1	2	0	0	copy fasta	E2F2	chr1	23501438	23536233
E2F2_chr1_23501438_23536233	0/0	t0011	3884	2	0	0	2	0	0	copy fasta	E2F2	chr1	23501438	23536233
E2F2_chr1_23501438_23536233	0/0	t0012	3883	2	1	1	0	0	0	copy fasta	E2F2	chr1	23501438	23536233
E2F2_chr1_23501438_23536233	0/0	t0013	3883	2	0	2	0	0	0	copy fasta	E2F2	chr1	23501438	23536233
E2F2_chr1_23501438_23536233	0/0	t0014	3883	2	2	0	0	0	0	copy fasta	E2F2	chr1	23501438	23536233
E2F2_chr1_23501438_23536233	0/0	t0015	3883	2	2	0	0	0	0	copy fasta	E2F2	chr1	23501438	23536233
E2F2_chr1_23501438_23536233	0/0	t0016	3884	1	0	0	1	0	0	copy fasta	E2F2	chr1	23501438	23536233
E2F2_chr1_23501438_23536233	0/0	t0017	3884	1	0	0	0	1	0	copy fasta	E2F2	chr1	23501438	23536233
E2F2_chr1_23501438_23536233	0/0	t0018	3884	1	1	0	0	0	0	copy fasta	E2F2	chr1	23501438	23536233
E2F2_chr1_23501438_23536233	0/0	t0019	3883	1	0	0	1	0	0	copy fasta	E2F2	chr1	23501438	23536233
E2F2_chr1_23501438_23536233	0/0	t0020	3883	1	0	0	1	0	0	copy fasta	E2F2	chr1	23501438	23536233
E2F2_chr1_23501438_23536233	0/0	t0021	3884	1	0	0	1	0	0	copy fasta	E2F2	chr1	23501438	23536233
E2F2_chr1_23501438_23536233	0/0	t0022	3884	1	0	0	0	0	1	copy fasta	E2F2	chr1	23501438	23536233
E2F2_chr1_23501438_23536233	0/0	t0023	3883	1	0	1	0	0	0	copy fasta	E2F2	chr1	23501438	23536233
E2F2_chr1_23501438_23536233	0/0	t0024	3883	1	1	0	0	0	0	copy fasta	E2F2	chr1	23501438	23536233
E2F2_chr1_23501438_23536233	0/0	t0025	3883	1	1	0	0	0	0	copy fasta	E2F2	chr1	23501438	23536233
E2F2_chr1_23501438_23536233	0/1	t0026	3884	1	0	0	0	0	0	copy fasta	E2F2	chr1	23501438	23536233
E2F2_chr1_23501438_23536233	0/0	t0027	3884	1	0	0	0	0	1	copy fasta	E2F2	chr1	23501438	23536233