JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
E2F2_chr1_23501438_23536233	0/0	t0028	3883	1	0	0	1	0	0	copy fasta	E2F2	chr1	23501438	23536233
E2F3_chr6_20396879_20498714	0/0	t0001	3639	128	48	22	34	6	18	copy fasta	E2F3	chr6	20396879	20498714
E2F3_chr6_20396879_20498714	1/0	t0002	3639	58	2	10	31	5	9	copy fasta	E2F3	chr6	20396879	20498714
E2F3_chr6_20396879_20498714	0/0	t0003	3638	48	5	9	27	1	6	copy fasta	E2F3	chr6	20396879	20498714
E2F3_chr6_20396879_20498714	0/0	t0004	3639	22	21	1	0	0	0	copy fasta	E2F3	chr6	20396879	20498714
E2F3_chr6_20396879_20498714	0/0	t0005	3639	13	0	3	9	0	1	copy fasta	E2F3	chr6	20396879	20498714
E2F3_chr6_20396879_20498714	0/0	t0006	3639	12	0	0	9	0	3	copy fasta	E2F3	chr6	20396879	20498714
E2F3_chr6_20396879_20498714	0/0	t0007	3639	8	2	6	0	0	0	copy fasta	E2F3	chr6	20396879	20498714
E2F3_chr6_20396879_20498714	0/0	t0008	3639	8	1	0	7	0	0	copy fasta	E2F3	chr6	20396879	20498714
E2F3_chr6_20396879_20498714	0/0	t0009	3639	7	6	1	0	0	0	copy fasta	E2F3	chr6	20396879	20498714
E2F3_chr6_20396879_20498714	0/0	t0010	3639	6	4	2	0	0	0	copy fasta	E2F3	chr6	20396879	20498714
E2F3_chr6_20396879_20498714	0/0	t0011	3638	3	0	0	3	0	0	copy fasta	E2F3	chr6	20396879	20498714
E2F3_chr6_20396879_20498714	0/0	t0012	3640	2	1	1	0	0	0	copy fasta	E2F3	chr6	20396879	20498714
E2F3_chr6_20396879_20498714	0/0	t0013	3638	2	0	0	2	0	0	copy fasta	E2F3	chr6	20396879	20498714
E2F3_chr6_20396879_20498714	0/0	t0014	3640	2	0	1	1	0	0	copy fasta	E2F3	chr6	20396879	20498714
E2F3_chr6_20396879_20498714	0/0	t0015	3639	1	0	0	0	0	1	copy fasta	E2F3	chr6	20396879	20498714
E2F3_chr6_20396879_20498714	0/0	t0016	3639	1	0	0	0	0	1	copy fasta	E2F3	chr6	20396879	20498714
E2F3_chr6_20396879_20498714	0/0	t0017	3638	1	0	0	1	0	0	copy fasta	E2F3	chr6	20396879	20498714
E2F3_chr6_20396879_20498714	0/0	t0018	3639	1	0	0	1	0	0	copy fasta	E2F3	chr6	20396879	20498714
E2F3_chr6_20396879_20498714	0/0	t0019	3639	1	0	0	0	0	1	copy fasta	E2F3	chr6	20396879	20498714
E2F3_chr6_20396879_20498714	0/0	t0020	3640	1	1	0	0	0	0	copy fasta	E2F3	chr6	20396879	20498714
E2F3_chr6_20396879_20498714	0/0	t0021	3639	1	0	0	1	0	0	copy fasta	E2F3	chr6	20396879	20498714
E2F3_chr6_20396879_20498714	0/0	t0022	3640	1	0	0	1	0	0	copy fasta	E2F3	chr6	20396879	20498714
E2F3_chr6_20396879_20498714	0/0	t0023	3639	1	1	0	0	0	0	copy fasta	E2F3	chr6	20396879	20498714
E2F3_chr6_20396879_20498714	0/0	t0024	3639	1	1	0	0	0	0	copy fasta	E2F3	chr6	20396879	20498714
E2F3_chr6_20396879_20498714	0/1	t0025	3639	1	0	0	0	0	0	copy fasta	E2F3	chr6	20396879	20498714
E2F3_chr6_20396879_20498714	0/0	t0026	3639	1	1	0	0	0	0	copy fasta	E2F3	chr6	20396879	20498714
E2F3_chr6_20396879_20498714	0/0	t0027	3639	1	1	0	0	0	0	copy fasta	E2F3	chr6	20396879	20498714
E2F3_chr6_20396879_20498714	0/0	t0028	3640	1	1	0	0	0	0	copy fasta	E2F3	chr6	20396879	20498714
E2F3_chr6_20396879_20498714	0/0	t0029	3639	1	1	0	0	0	0	copy fasta	E2F3	chr6	20396879	20498714
E2F3_chr6_20396879_20498714	0/0	t0030	3639	1	0	0	1	0	0	copy fasta	E2F3	chr6	20396879	20498714
E2F3_chr6_20396879_20498714	0/0	t0031	3638	1	1	0	0	0	0	copy fasta	E2F3	chr6	20396879	20498714
E2F4_chr16_67187155_67203918	1/1	t0001	869	266	58	58	108	11	29	copy fasta	E2F4	chr16	67187155	67203918
E2F4_chr16_67187155_67203918	0/0	t0002	869	44	28	4	4	1	7	copy fasta	E2F4	chr16	67187155	67203918
E2F4_chr16_67187155_67203918	0/0	t0003	869	3	3	0	0	0	0	copy fasta	E2F4	chr16	67187155	67203918
E2F4_chr16_67187155_67203918	0/0	t0004	869	1	0	0	1	0	0	copy fasta	E2F4	chr16	67187155	67203918
E2F4_chr16_67187155_67203918	0/0	t0005	869	1	0	0	0	0	1	copy fasta	E2F4	chr16	67187155	67203918
E2F4_chr16_67187155_67203918	0/0	t0006	869	1	1	0	0	0	0	copy fasta	E2F4	chr16	67187155	67203918
E2F4_chr16_67187155_67203918	0/0	t0007	846	1	0	0	0	0	1	copy fasta	E2F4	chr16	67187155	67203918
E2F4_chr16_67187155_67203918	0/0	t0008	869	1	0	0	1	0	0	copy fasta	E2F4	chr16	67187155	67203918
E2F4_chr16_67187155_67203918	0/0	t0009	869	1	1	0	0	0	0	copy fasta	E2F4	chr16	67187155	67203918
E2F4_chr16_67187155_67203918	0/0	t0010	869	1	1	0	0	0	0	copy fasta	E2F4	chr16	67187155	67203918
E2F5_chr8_85172154_85219518	1/1	t0001	924	327	80	55	140	12	38	copy fasta	E2F5	chr8	85172154	85219518
E2F5_chr8_85172154_85219518	0/0	t0002	920	5	4	1	0	0	0	copy fasta	E2F5	chr8	85172154	85219518
E2F5_chr8_85172154_85219518	0/0	t0003	924	3	0	0	3	0	0	copy fasta	E2F5	chr8	85172154	85219518
E2F5_chr8_85172154_85219518	0/0	t0004	924	1	0	0	1	0	0	copy fasta	E2F5	chr8	85172154	85219518
E2F6_chr2_11439375_11471161	1/0	t0001	2385	167	41	44	61	4	16	copy fasta	E2F6	chr2	11439375	11471161
E2F6_chr2_11439375_11471161	0/1	t0002	2385	125	7	24	71	5	17	copy fasta	E2F6	chr2	11439375	11471161
E2F6_chr2_11439375_11471161	0/0	t0003	2385	27	25	2	0	0	0	copy fasta	E2F6	chr2	11439375	11471161
E2F6_chr2_11439375_11471161	0/0	t0004	2385	12	0	1	11	0	0	copy fasta	E2F6	chr2	11439375	11471161