JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
E2F6_chr2_11439375_11471161	0/0	t0005	2384	9	0	0	9	0	0	copy fasta	E2F6	chr2	11439375	11471161
E2F6_chr2_11439375_11471161	0/0	t0006	2385	5	4	1	0	0	0	copy fasta	E2F6	chr2	11439375	11471161
E2F6_chr2_11439375_11471161	0/0	t0007	2385	4	4	0	0	0	0	copy fasta	E2F6	chr2	11439375	11471161
E2F6_chr2_11439375_11471161	0/0	t0008	2385	3	3	0	0	0	0	copy fasta	E2F6	chr2	11439375	11471161
E2F6_chr2_11439375_11471161	0/0	t0009	2385	2	2	0	0	0	0	copy fasta	E2F6	chr2	11439375	11471161
E2F6_chr2_11439375_11471161	0/0	t0010	2385	2	0	1	0	1	0	copy fasta	E2F6	chr2	11439375	11471161
E2F6_chr2_11439375_11471161	0/0	t0011	2385	2	0	0	2	0	0	copy fasta	E2F6	chr2	11439375	11471161
E2F6_chr2_11439375_11471161	0/0	t0012	2385	2	0	0	0	0	2	copy fasta	E2F6	chr2	11439375	11471161
E2F6_chr2_11439375_11471161	0/0	t0013	2385	1	0	0	1	0	0	copy fasta	E2F6	chr2	11439375	11471161
E2F6_chr2_11439375_11471161	0/0	t0014	2385	1	0	0	0	0	1	copy fasta	E2F6	chr2	11439375	11471161
E2F6_chr2_11439375_11471161	0/0	t0015	2385	1	0	0	1	0	0	copy fasta	E2F6	chr2	11439375	11471161
E2F6_chr2_11439375_11471161	0/0	t0016	2385	1	0	1	0	0	0	copy fasta	E2F6	chr2	11439375	11471161
E2F6_chr2_11439375_11471161	0/0	t0017	2385	1	1	0	0	0	0	copy fasta	E2F6	chr2	11439375	11471161
E2F6_chr2_11439375_11471161	0/0	t0018	2385	1	1	0	0	0	0	copy fasta	E2F6	chr2	11439375	11471161
E2F7_chr12_77016251_77070569	0/0	t0001	2991	214	49	30	105	8	22	copy fasta	E2F7	chr12	77016251	77070569
E2F7_chr12_77016251_77070569	0/1	t0002	2991	123	18	32	57	1	14	copy fasta	E2F7	chr12	77016251	77070569
E2F7_chr12_77016251_77070569	0/0	t0003	2991	11	10	1	0	0	0	copy fasta	E2F7	chr12	77016251	77070569
E2F7_chr12_77016251_77070569	0/0	t0004	2991	7	0	5	0	1	1	copy fasta	E2F7	chr12	77016251	77070569
E2F7_chr12_77016251_77070569	1/0	t0005	2990	7	5	1	0	0	0	copy fasta	E2F7	chr12	77016251	77070569
E2F7_chr12_77016251_77070569	0/0	t0006	2991	4	1	3	0	0	0	copy fasta	E2F7	chr12	77016251	77070569
E2F7_chr12_77016251_77070569	0/0	t0007	2991	3	1	0	0	0	2	copy fasta	E2F7	chr12	77016251	77070569
E2F7_chr12_77016251_77070569	0/0	t0008	2991	2	0	1	0	0	1	copy fasta	E2F7	chr12	77016251	77070569
E2F7_chr12_77016251_77070569	0/0	t0009	2991	2	0	0	2	0	0	copy fasta	E2F7	chr12	77016251	77070569
E2F7_chr12_77016251_77070569	0/0	t0010	2991	2	2	0	0	0	0	copy fasta	E2F7	chr12	77016251	77070569
E2F7_chr12_77016251_77070569	0/0	t0011	2991	2	0	0	2	0	0	copy fasta	E2F7	chr12	77016251	77070569
E2F7_chr12_77016251_77070569	0/0	t0012	2991	2	0	0	2	0	0	copy fasta	E2F7	chr12	77016251	77070569
E2F7_chr12_77016251_77070569	0/0	t0013	2991	2	0	2	0	0	0	copy fasta	E2F7	chr12	77016251	77070569
E2F7_chr12_77016251_77070569	0/0	t0014	2991	2	2	0	0	0	0	copy fasta	E2F7	chr12	77016251	77070569
E2F7_chr12_77016251_77070569	0/0	t0015	2991	2	2	0	0	0	0	copy fasta	E2F7	chr12	77016251	77070569
E2F7_chr12_77016251_77070569	0/0	t0016	2991	1	0	1	0	0	0	copy fasta	E2F7	chr12	77016251	77070569
E2F7_chr12_77016251_77070569	0/0	t0017	2991	1	0	1	0	0	0	copy fasta	E2F7	chr12	77016251	77070569
E2F7_chr12_77016251_77070569	0/0	t0018	2991	1	0	1	0	0	0	copy fasta	E2F7	chr12	77016251	77070569
E2F7_chr12_77016251_77070569	0/0	t0019	2991	1	0	0	1	0	0	copy fasta	E2F7	chr12	77016251	77070569
E2F7_chr12_77016251_77070569	0/0	t0020	2991	1	1	0	0	0	0	copy fasta	E2F7	chr12	77016251	77070569
E2F7_chr12_77016251_77070569	0/0	t0021	2991	1	0	1	0	0	0	copy fasta	E2F7	chr12	77016251	77070569
E2F7_chr12_77016251_77070569	0/0	t0022	2991	1	0	1	0	0	0	copy fasta	E2F7	chr12	77016251	77070569
E2F7_chr12_77016251_77070569	0/0	t0023	2991	1	1	0	0	0	0	copy fasta	E2F7	chr12	77016251	77070569
E2F7_chr12_77016251_77070569	0/0	t0024	2991	1	0	0	1	0	0	copy fasta	E2F7	chr12	77016251	77070569
E2F8_chr11_19219063_19245945	0/1	t0001	1103	120	2	26	67	6	18	copy fasta	E2F8	chr11	19219063	19245945
E2F8_chr11_19219063_19245945	0/0	t0002	1105	100	5	23	59	2	11	copy fasta	E2F8	chr11	19219063	19245945
E2F8_chr11_19219063_19245945	0/0	t0003	1103	72	18	9	36	5	4	copy fasta	E2F8	chr11	19219063	19245945
E2F8_chr11_19219063_19245945	0/0	t0004	1099	47	24	4	14	1	4	copy fasta	E2F8	chr11	19219063	19245945
E2F8_chr11_19219063_19245945	0/0	t0005	1101	31	17	5	2	3	4	copy fasta	E2F8	chr11	19219063	19245945
E2F8_chr11_19219063_19245945	0/0	t0006	1105	16	6	1	9	0	0	copy fasta	E2F8	chr11	19219063	19245945
E2F8_chr11_19219063_19245945	0/0	t0007	1103	8	1	1	6	0	0	copy fasta	E2F8	chr11	19219063	19245945
E2F8_chr11_19219063_19245945	1/0	t0008	1103	6	2	0	3	0	0	copy fasta	E2F8	chr11	19219063	19245945
E2F8_chr11_19219063_19245945	0/0	t0009	1105	6	6	0	0	0	0	copy fasta	E2F8	chr11	19219063	19245945
E2F8_chr11_19219063_19245945	0/0	t0010	1101	4	2	1	0	1	0	copy fasta	E2F8	chr11	19219063	19245945
E2F8_chr11_19219063_19245945	0/0	t0011	1101	4	4	0	0	0	0	copy fasta	E2F8	chr11	19219063	19245945
E2F8_chr11_19219063_19245945	0/0	t0012	1107	3	3	0	0	0	0	copy fasta	E2F8	chr11	19219063	19245945