JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
E2F8_chr11_19219063_19245945	0/0	t0013	1105	3	0	0	3	0	0	copy fasta	E2F8	chr11	19219063	19245945
E2F8_chr11_19219063_19245945	0/0	t0014	1101	3	1	1	0	0	1	copy fasta	E2F8	chr11	19219063	19245945
E2F8_chr11_19219063_19245945	0/0	t0015	1103	2	1	1	0	0	0	copy fasta	E2F8	chr11	19219063	19245945
E2F8_chr11_19219063_19245945	0/0	t0016	1107	2	2	0	0	0	0	copy fasta	E2F8	chr11	19219063	19245945
E2F8_chr11_19219063_19245945	0/0	t0017	1099	2	0	0	2	0	0	copy fasta	E2F8	chr11	19219063	19245945
E2F8_chr11_19219063_19245945	0/0	t0018	1105	1	0	1	0	0	0	copy fasta	E2F8	chr11	19219063	19245945
E2F8_chr11_19219063_19245945	0/0	t0019	1103	1	0	0	1	0	0	copy fasta	E2F8	chr11	19219063	19245945
E2F8_chr11_19219063_19245945	0/0	t0020	1105	1	0	0	1	0	0	copy fasta	E2F8	chr11	19219063	19245945
E2F8_chr11_19219063_19245945	0/0	t0021	1103	1	0	0	1	0	0	copy fasta	E2F8	chr11	19219063	19245945
E2F8_chr11_19219063_19245945	0/0	t0022	1103	1	1	0	0	0	0	copy fasta	E2F8	chr11	19219063	19245945
E2F8_chr11_19219063_19245945	0/0	t0023	1099	1	0	0	0	0	1	copy fasta	E2F8	chr11	19219063	19245945
E2F8_chr11_19219063_19245945	0/0	t0024	1103	1	0	1	0	0	0	copy fasta	E2F8	chr11	19219063	19245945
E2F8_chr11_19219063_19245945	0/0	t0025	1103	1	0	0	0	0	1	copy fasta	E2F8	chr11	19219063	19245945
E2F8_chr11_19219063_19245945	0/0	t0026	1101	1	1	0	0	0	0	copy fasta	E2F8	chr11	19219063	19245945
E4F1_chr16_2218591_2240742	1/1	t0001	194	389	98	74	154	16	45	copy fasta	E4F1	chr16	2218591	2240742
E4F1_chr16_2218591_2240742	0/0	t0002	194	2	0	0	0	0	2	copy fasta	E4F1	chr16	2218591	2240742
E4F1_chr16_2218591_2240742	0/0	t0003	194	1	0	0	0	0	1	copy fasta	E4F1	chr16	2218591	2240742
EAF1_chr3_15422598_15447613	1/0	t0001	3641	123	11	31	61	5	14	copy fasta	EAF1	chr3	15422598	15447613
EAF1_chr3_15422598_15447613	0/1	t0002	3640	69	11	12	30	3	12	copy fasta	EAF1	chr3	15422598	15447613
EAF1_chr3_15422598_15447613	0/0	t0003	3642	53	10	8	32	1	2	copy fasta	EAF1	chr3	15422598	15447613
EAF1_chr3_15422598_15447613	0/0	t0004	3642	28	0	6	15	2	5	copy fasta	EAF1	chr3	15422598	15447613
EAF1_chr3_15422598_15447613	0/0	t0005	3643	21	1	3	13	1	3	copy fasta	EAF1	chr3	15422598	15447613
EAF1_chr3_15422598_15447613	0/0	t0006	3643	15	5	3	5	0	2	copy fasta	EAF1	chr3	15422598	15447613
EAF1_chr3_15422598_15447613	0/0	t0007	3643	14	13	1	0	0	0	copy fasta	EAF1	chr3	15422598	15447613
EAF1_chr3_15422598_15447613	0/0	t0008	3640	11	10	1	0	0	0	copy fasta	EAF1	chr3	15422598	15447613
EAF1_chr3_15422598_15447613	0/0	t0009	3642	10	1	1	7	0	1	copy fasta	EAF1	chr3	15422598	15447613
EAF1_chr3_15422598_15447613	0/0	t0010	3644	7	6	0	1	0	0	copy fasta	EAF1	chr3	15422598	15447613
EAF1_chr3_15422598_15447613	0/0	t0011	3643	6	1	1	4	0	0	copy fasta	EAF1	chr3	15422598	15447613
EAF1_chr3_15422598_15447613	0/0	t0012	3644	4	1	0	1	0	2	copy fasta	EAF1	chr3	15422598	15447613
EAF1_chr3_15422598_15447613	0/0	t0013	3644	4	0	0	3	0	1	copy fasta	EAF1	chr3	15422598	15447613
EAF1_chr3_15422598_15447613	0/0	t0014	3641	4	0	1	2	0	1	copy fasta	EAF1	chr3	15422598	15447613
EAF1_chr3_15422598_15447613	0/0	t0015	3642	3	3	0	0	0	0	copy fasta	EAF1	chr3	15422598	15447613
EAF1_chr3_15422598_15447613	0/0	t0016	3640	3	3	0	0	0	0	copy fasta	EAF1	chr3	15422598	15447613
EAF1_chr3_15422598_15447613	0/0	t0017	3656	3	3	0	0	0	0	copy fasta	EAF1	chr3	15422598	15447613
EAF1_chr3_15422598_15447613	0/0	t0018	3644	3	0	0	3	0	0	copy fasta	EAF1	chr3	15422598	15447613
EAF1_chr3_15422598_15447613	0/0	t0019	3643	3	0	1	2	0	0	copy fasta	EAF1	chr3	15422598	15447613
EAF1_chr3_15422598_15447613	0/0	t0020	3642	2	0	0	2	0	0	copy fasta	EAF1	chr3	15422598	15447613
EAF1_chr3_15422598_15447613	0/0	t0021	3652	2	2	0	0	0	0	copy fasta	EAF1	chr3	15422598	15447613
EAF1_chr3_15422598_15447613	0/0	t0022	3648	2	0	0	2	0	0	copy fasta	EAF1	chr3	15422598	15447613
EAF1_chr3_15422598_15447613	0/0	t0023	3647	2	0	0	2	0	0	copy fasta	EAF1	chr3	15422598	15447613
EAF1_chr3_15422598_15447613	0/0	t0024	3643	2	1	1	0	0	0	copy fasta	EAF1	chr3	15422598	15447613
EAF1_chr3_15422598_15447613	0/0	t0025	3649	2	2	0	0	0	0	copy fasta	EAF1	chr3	15422598	15447613
EAF1_chr3_15422598_15447613	0/0	t0026	3638	2	2	0	0	0	0	copy fasta	EAF1	chr3	15422598	15447613
EAF1_chr3_15422598_15447613	0/0	t0027	3645	2	0	0	2	0	0	copy fasta	EAF1	chr3	15422598	15447613
EAF1_chr3_15422598_15447613	0/0	t0028	3643	1	1	0	0	0	0	copy fasta	EAF1	chr3	15422598	15447613
EAF1_chr3_15422598_15447613	0/0	t0029	3643	1	1	0	0	0	0	copy fasta	EAF1	chr3	15422598	15447613
EAF1_chr3_15422598_15447613	0/0	t0030	3645	1	1	0	0	0	0	copy fasta	EAF1	chr3	15422598	15447613
EAF1_chr3_15422598_15447613	0/0	t0031	3645	1	0	0	0	0	1	copy fasta	EAF1	chr3	15422598	15447613
EAF1_chr3_15422598_15447613	0/0	t0032	3649	1	0	0	1	0	0	copy fasta	EAF1	chr3	15422598	15447613
EAF1_chr3_15422598_15447613	0/0	t0033	3641	1	0	0	1	0	0	copy fasta	EAF1	chr3	15422598	15447613