JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
EAF1_chr3_15422598_15447613	0/0	t0034	3647	1	1	0	0	0	0	copy fasta	EAF1	chr3	15422598	15447613
EAF1_chr3_15422598_15447613	0/0	t0035	3647	1	1	0	0	0	0	copy fasta	EAF1	chr3	15422598	15447613
EAF1_chr3_15422598_15447613	0/0	t0036	3643	1	1	0	0	0	0	copy fasta	EAF1	chr3	15422598	15447613
EAF1_chr3_15422598_15447613	0/0	t0037	3647	1	1	0	0	0	0	copy fasta	EAF1	chr3	15422598	15447613
EAF1_chr3_15422598_15447613	0/0	t0038	3641	1	0	0	0	0	1	copy fasta	EAF1	chr3	15422598	15447613
EAF1_chr3_15422598_15447613	0/0	t0039	3641	1	0	0	0	0	1	copy fasta	EAF1	chr3	15422598	15447613
EAF1_chr3_15422598_15447613	0/0	t0040	3640	1	1	0	0	0	0	copy fasta	EAF1	chr3	15422598	15447613
EAF1_chr3_15422598_15447613	0/0	t0041	3639	1	1	0	0	0	0	copy fasta	EAF1	chr3	15422598	15447613
EAF1_chr3_15422598_15447613	0/0	t0042	3645	1	1	0	0	0	0	copy fasta	EAF1	chr3	15422598	15447613
EAF1_chr3_15422598_15447613	0/0	t0043	3646	1	1	0	0	0	0	copy fasta	EAF1	chr3	15422598	15447613
EAF1_chr3_15422598_15447613	0/0	t0044	3643	1	0	0	1	0	0	copy fasta	EAF1	chr3	15422598	15447613
EAF1_chr3_15422598_15447613	0/0	t0045	3641	1	1	0	0	0	0	copy fasta	EAF1	chr3	15422598	15447613
EAF2_chr3_121830209_121891526	1/1	t0001	216	316	86	72	106	13	37	copy fasta	EAF2	chr3	121830209	121891526
EAF2_chr3_121830209_121891526	0/0	t0002	216	1	0	0	0	1	0	copy fasta	EAF2	chr3	121830209	121891526
EAF2_chr3_121830209_121891526	0/0	t0003	216	1	0	0	0	0	1	copy fasta	EAF2	chr3	121830209	121891526
EAPP_chr14_34510938_34544701	1/1	t0001	446	337	78	59	148	14	36	copy fasta	EAPP	chr14	34510938	34544701
EAPP_chr14_34510938_34544701	0/0	t0002	446	11	5	3	0	0	3	copy fasta	EAPP	chr14	34510938	34544701
EAPP_chr14_34510938_34544701	0/0	t0003	446	9	9	0	0	0	0	copy fasta	EAPP	chr14	34510938	34544701
EAPP_chr14_34510938_34544701	0/0	t0004	446	2	0	0	2	0	0	copy fasta	EAPP	chr14	34510938	34544701
EAPP_chr14_34510938_34544701	0/0	t0005	446	1	0	0	0	0	1	copy fasta	EAPP	chr14	34510938	34544701
EARS2_chr16_23515754_23562350	0/1	t0001	3619	128	24	24	53	7	19	copy fasta	EARS2	chr16	23515754	23562350
EARS2_chr16_23515754_23562350	1/0	t0002	3625	64	7	8	32	7	9	copy fasta	EARS2	chr16	23515754	23562350
EARS2_chr16_23515754_23562350	0/0	t0003	3624	28	12	6	5	0	5	copy fasta	EARS2	chr16	23515754	23562350
EARS2_chr16_23515754_23562350	0/0	t0004	3619	7	1	3	0	2	1	copy fasta	EARS2	chr16	23515754	23562350
EARS2_chr16_23515754_23562350	0/0	t0005	3624	7	7	0	0	0	0	copy fasta	EARS2	chr16	23515754	23562350
EARS2_chr16_23515754_23562350	0/0	t0006	3625	5	0	0	4	0	1	copy fasta	EARS2	chr16	23515754	23562350
EARS2_chr16_23515754_23562350	0/0	t0007	3940	4	0	4	0	0	0	copy fasta	EARS2	chr16	23515754	23562350
EARS2_chr16_23515754_23562350	0/0	t0008	3623	4	4	0	0	0	0	copy fasta	EARS2	chr16	23515754	23562350
EARS2_chr16_23515754_23562350	0/0	t0009	3624	4	4	0	0	0	0	copy fasta	EARS2	chr16	23515754	23562350
EARS2_chr16_23515754_23562350	0/0	t0010	3623	3	2	1	0	0	0	copy fasta	EARS2	chr16	23515754	23562350
EARS2_chr16_23515754_23562350	0/0	t0011	3619	3	3	0	0	0	0	copy fasta	EARS2	chr16	23515754	23562350
EARS2_chr16_23515754_23562350	0/0	t0012	3619	3	0	2	0	0	1	copy fasta	EARS2	chr16	23515754	23562350
EARS2_chr16_23515754_23562350	0/0	t0013	3619	3	0	0	3	0	0	copy fasta	EARS2	chr16	23515754	23562350
EARS2_chr16_23515754_23562350	0/0	t0014	3941	2	0	2	0	0	0	copy fasta	EARS2	chr16	23515754	23562350
EARS2_chr16_23515754_23562350	0/0	t0015	3619	2	0	0	1	0	1	copy fasta	EARS2	chr16	23515754	23562350
EARS2_chr16_23515754_23562350	0/0	t0016	3619	2	2	0	0	0	0	copy fasta	EARS2	chr16	23515754	23562350
EARS2_chr16_23515754_23562350	0/0	t0017	3625	2	0	0	2	0	0	copy fasta	EARS2	chr16	23515754	23562350
EARS2_chr16_23515754_23562350	0/0	t0018	3619	1	0	1	0	0	0	copy fasta	EARS2	chr16	23515754	23562350
EARS2_chr16_23515754_23562350	0/0	t0019	3624	1	1	0	0	0	0	copy fasta	EARS2	chr16	23515754	23562350
EARS2_chr16_23515754_23562350	0/0	t0020	3603	1	1	0	0	0	0	copy fasta	EARS2	chr16	23515754	23562350
EARS2_chr16_23515754_23562350	0/0	t0021	3625	1	1	0	0	0	0	copy fasta	EARS2	chr16	23515754	23562350
EARS2_chr16_23515754_23562350	0/0	t0022	3625	1	1	0	0	0	0	copy fasta	EARS2	chr16	23515754	23562350
EARS2_chr16_23515754_23562350	0/0	t0023	3624	1	1	0	0	0	0	copy fasta	EARS2	chr16	23515754	23562350
EARS2_chr16_23515754_23562350	0/0	t0024	3939	1	0	1	0	0	0	copy fasta	EARS2	chr16	23515754	23562350
EARS2_chr16_23515754_23562350	0/0	t0025	3622	1	1	0	0	0	0	copy fasta	EARS2	chr16	23515754	23562350
EARS2_chr16_23515754_23562350	0/0	t0026	3619	1	1	0	0	0	0	copy fasta	EARS2	chr16	23515754	23562350
EARS2_chr16_23515754_23562350	0/0	t0027	3619	1	0	0	1	0	0	copy fasta	EARS2	chr16	23515754	23562350
EARS2_chr16_23515754_23562350	0/0	t0028	3619	1	0	0	0	0	1	copy fasta	EARS2	chr16	23515754	23562350
EARS2_chr16_23515754_23562350	0/0	t0029	3619	1	0	0	1	0	0	copy fasta	EARS2	chr16	23515754	23562350
EARS2_chr16_23515754_23562350	0/0	t0030	3625	1	0	0	1	0	0	copy fasta	EARS2	chr16	23515754	23562350