JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
EARS2_chr16_23515754_23562350	0/0	t0031	3599	1	0	0	1	0	0	copy fasta	EARS2	chr16	23515754	23562350
EARS2_chr16_23515754_23562350	0/0	t0032	3625	1	1	0	0	0	0	copy fasta	EARS2	chr16	23515754	23562350
EBAG9_chr8_109535173_109570996	0/1	t0001	1742	139	19	30	71	6	12	copy fasta	EBAG9	chr8	109535173	109570996
EBAG9_chr8_109535173_109570996	0/0	t0002	1742	90	56	19	0	3	12	copy fasta	EBAG9	chr8	109535173	109570996
EBAG9_chr8_109535173_109570996	1/0	t0003	1742	89	2	20	53	6	7	copy fasta	EBAG9	chr8	109535173	109570996
EBAG9_chr8_109535173_109570996	0/0	t0004	1739	6	6	0	0	0	0	copy fasta	EBAG9	chr8	109535173	109570996
EBAG9_chr8_109535173_109570996	0/0	t0005	1742	4	4	0	0	0	0	copy fasta	EBAG9	chr8	109535173	109570996
EBAG9_chr8_109535173_109570996	0/0	t0006	1742	3	0	1	0	1	1	copy fasta	EBAG9	chr8	109535173	109570996
EBAG9_chr8_109535173_109570996	0/0	t0007	1742	3	0	1	0	0	2	copy fasta	EBAG9	chr8	109535173	109570996
EBAG9_chr8_109535173_109570996	0/0	t0008	1742	3	0	0	3	0	0	copy fasta	EBAG9	chr8	109535173	109570996
EBAG9_chr8_109535173_109570996	0/0	t0009	1740	2	2	0	0	0	0	copy fasta	EBAG9	chr8	109535173	109570996
EBAG9_chr8_109535173_109570996	0/0	t0010	1742	2	0	0	2	0	0	copy fasta	EBAG9	chr8	109535173	109570996
EBAG9_chr8_109535173_109570996	0/0	t0011	1742	2	0	0	0	0	2	copy fasta	EBAG9	chr8	109535173	109570996
EBAG9_chr8_109535173_109570996	0/0	t0012	1742	2	0	2	0	0	0	copy fasta	EBAG9	chr8	109535173	109570996
EBAG9_chr8_109535173_109570996	0/0	t0013	1742	2	2	0	0	0	0	copy fasta	EBAG9	chr8	109535173	109570996
EBAG9_chr8_109535173_109570996	0/0	t0014	1740	1	1	0	0	0	0	copy fasta	EBAG9	chr8	109535173	109570996
EBAG9_chr8_109535173_109570996	0/0	t0015	1739	1	1	0	0	0	0	copy fasta	EBAG9	chr8	109535173	109570996
EBAG9_chr8_109535173_109570996	0/0	t0016	1742	1	0	0	1	0	0	copy fasta	EBAG9	chr8	109535173	109570996
EBAG9_chr8_109535173_109570996	0/0	t0017	1742	1	0	0	1	0	0	copy fasta	EBAG9	chr8	109535173	109570996
EBAG9_chr8_109535173_109570996	0/0	t0018	1742	1	0	0	1	0	0	copy fasta	EBAG9	chr8	109535173	109570996
EBAG9_chr8_109535173_109570996	0/0	t0019	1742	1	1	0	0	0	0	copy fasta	EBAG9	chr8	109535173	109570996
EBAG9_chr8_109535173_109570996	0/0	t0020	1742	1	1	0	0	0	0	copy fasta	EBAG9	chr8	109535173	109570996
EBAG9_chr8_109535173_109570996	0/0	t0021	1742	1	0	1	0	0	0	copy fasta	EBAG9	chr8	109535173	109570996
EBAG9_chr8_109535173_109570996	0/0	t0022	1742	1	1	0	0	0	0	copy fasta	EBAG9	chr8	109535173	109570996
EBF1_chr5_158690920_159104916	0/0	t0001	3628	21	5	9	2	3	2	copy fasta	EBF1	chr5	158690920	159104916
EBF1_chr5_158690920_159104916	0/0	t0002	3627	15	7	5	3	0	0	copy fasta	EBF1	chr5	158690920	159104916
EBF1_chr5_158690920_159104916	0/0	t0003	3629	9	0	6	1	1	1	copy fasta	EBF1	chr5	158690920	159104916
EBF1_chr5_158690920_159104916	0/0	t0004	3628	9	1	7	0	0	1	copy fasta	EBF1	chr5	158690920	159104916
EBF1_chr5_158690920_159104916	0/0	t0005	3628	9	0	3	5	1	0	copy fasta	EBF1	chr5	158690920	159104916
EBF1_chr5_158690920_159104916	0/0	t0006	3631	8	1	2	5	0	0	copy fasta	EBF1	chr5	158690920	159104916
EBF1_chr5_158690920_159104916	0/0	t0007	3631	6	2	0	4	0	0	copy fasta	EBF1	chr5	158690920	159104916
EBF1_chr5_158690920_159104916	0/0	t0008	3628	5	5	0	0	0	0	copy fasta	EBF1	chr5	158690920	159104916
EBF1_chr5_158690920_159104916	0/0	t0009	3630	4	2	1	1	0	0	copy fasta	EBF1	chr5	158690920	159104916
EBF1_chr5_158690920_159104916	0/0	t0010	3631	4	0	1	2	0	1	copy fasta	EBF1	chr5	158690920	159104916
EBF1_chr5_158690920_159104916	0/0	t0011	3629	4	4	0	0	0	0	copy fasta	EBF1	chr5	158690920	159104916
EBF1_chr5_158690920_159104916	0/0	t0012	3631	3	0	1	0	1	1	copy fasta	EBF1	chr5	158690920	159104916
EBF1_chr5_158690920_159104916	0/0	t0013	3632	2	0	0	2	0	0	copy fasta	EBF1	chr5	158690920	159104916
EBF1_chr5_158690920_159104916	0/0	t0014	3631	2	0	0	0	2	0	copy fasta	EBF1	chr5	158690920	159104916
EBF1_chr5_158690920_159104916	0/0	t0015	3629	2	2	0	0	0	0	copy fasta	EBF1	chr5	158690920	159104916
EBF1_chr5_158690920_159104916	0/0	t0016	3628	2	0	0	2	0	0	copy fasta	EBF1	chr5	158690920	159104916
EBF1_chr5_158690920_159104916	0/0	t0017	3629	2	0	0	2	0	0	copy fasta	EBF1	chr5	158690920	159104916
EBF1_chr5_158690920_159104916	0/0	t0018	3631	2	2	0	0	0	0	copy fasta	EBF1	chr5	158690920	159104916
EBF1_chr5_158690920_159104916	0/0	t0019	3630	2	0	0	2	0	0	copy fasta	EBF1	chr5	158690920	159104916
EBF1_chr5_158690920_159104916	0/0	t0020	3624	2	2	0	0	0	0	copy fasta	EBF1	chr5	158690920	159104916
EBF1_chr5_158690920_159104916	0/0	t0021	3628	2	1	1	0	0	0	copy fasta	EBF1	chr5	158690920	159104916
EBF1_chr5_158690920_159104916	0/0	t0022	3626	2	2	0	0	0	0	copy fasta	EBF1	chr5	158690920	159104916
EBF1_chr5_158690920_159104916	0/0	t0023	3628	2	1	1	0	0	0	copy fasta	EBF1	chr5	158690920	159104916
EBF1_chr5_158690920_159104916	0/0	t0024	3627	2	1	1	0	0	0	copy fasta	EBF1	chr5	158690920	159104916
EBF1_chr5_158690920_159104916	0/0	t0025	3627	2	2	0	0	0	0	copy fasta	EBF1	chr5	158690920	159104916
EBF1_chr5_158690920_159104916	0/0	t0026	3629	2	1	0	1	0	0	copy fasta	EBF1	chr5	158690920	159104916