JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
EBF1_chr5_158690920_159104916	0/0	t0027	3629	2	0	1	0	1	0	copy fasta	EBF1	chr5	158690920	159104916
EBF1_chr5_158690920_159104916	0/0	t0028	3628	2	0	2	0	0	0	copy fasta	EBF1	chr5	158690920	159104916
EBF1_chr5_158690920_159104916	0/0	t0029	3629	1	1	0	0	0	0	copy fasta	EBF1	chr5	158690920	159104916
EBF1_chr5_158690920_159104916	0/0	t0030	3631	1	1	0	0	0	0	copy fasta	EBF1	chr5	158690920	159104916
EBF1_chr5_158690920_159104916	0/0	t0031	3631	1	1	0	0	0	0	copy fasta	EBF1	chr5	158690920	159104916
EBF1_chr5_158690920_159104916	0/0	t0032	3629	1	1	0	0	0	0	copy fasta	EBF1	chr5	158690920	159104916
EBF1_chr5_158690920_159104916	0/0	t0033	3629	1	1	0	0	0	0	copy fasta	EBF1	chr5	158690920	159104916
EBF1_chr5_158690920_159104916	0/0	t0034	3630	1	0	0	1	0	0	copy fasta	EBF1	chr5	158690920	159104916
EBF1_chr5_158690920_159104916	0/0	t0035	3630	1	0	1	0	0	0	copy fasta	EBF1	chr5	158690920	159104916
EBF1_chr5_158690920_159104916	0/0	t0036	3632	1	0	1	0	0	0	copy fasta	EBF1	chr5	158690920	159104916
EBF1_chr5_158690920_159104916	0/0	t0037	3632	1	0	1	0	0	0	copy fasta	EBF1	chr5	158690920	159104916
EBF1_chr5_158690920_159104916	0/0	t0038	3630	1	0	0	0	0	1	copy fasta	EBF1	chr5	158690920	159104916
EBF1_chr5_158690920_159104916	0/0	t0039	3632	1	1	0	0	0	0	copy fasta	EBF1	chr5	158690920	159104916
EBF1_chr5_158690920_159104916	0/0	t0040	3632	1	0	0	1	0	0	copy fasta	EBF1	chr5	158690920	159104916
EBF1_chr5_158690920_159104916	0/0	t0041	3632	1	0	0	0	0	1	copy fasta	EBF1	chr5	158690920	159104916
EBF1_chr5_158690920_159104916	0/0	t0042	3631	1	0	0	1	0	0	copy fasta	EBF1	chr5	158690920	159104916
EBF1_chr5_158690920_159104916	0/0	t0043	3631	1	0	0	1	0	0	copy fasta	EBF1	chr5	158690920	159104916
EBF1_chr5_158690920_159104916	0/0	t0044	3630	1	1	0	0	0	0	copy fasta	EBF1	chr5	158690920	159104916
EBF1_chr5_158690920_159104916	0/0	t0045	3629	1	1	0	0	0	0	copy fasta	EBF1	chr5	158690920	159104916
EBF1_chr5_158690920_159104916	0/0	t0046	3629	1	1	0	0	0	0	copy fasta	EBF1	chr5	158690920	159104916
EBF1_chr5_158690920_159104916	0/0	t0047	3628	1	0	0	1	0	0	copy fasta	EBF1	chr5	158690920	159104916
EBF1_chr5_158690920_159104916	0/0	t0048	3629	1	1	0	0	0	0	copy fasta	EBF1	chr5	158690920	159104916
EBF1_chr5_158690920_159104916	0/0	t0049	3630	1	1	0	0	0	0	copy fasta	EBF1	chr5	158690920	159104916
EBF1_chr5_158690920_159104916	0/0	t0050	3631	1	1	0	0	0	0	copy fasta	EBF1	chr5	158690920	159104916
EBF1_chr5_158690920_159104916	0/0	t0051	3630	1	1	0	0	0	0	copy fasta	EBF1	chr5	158690920	159104916
EBF1_chr5_158690920_159104916	0/0	t0052	3630	1	1	0	0	0	0	copy fasta	EBF1	chr5	158690920	159104916
EBF1_chr5_158690920_159104916	0/0	t0053	3633	1	1	0	0	0	0	copy fasta	EBF1	chr5	158690920	159104916
EBF1_chr5_158690920_159104916	0/0	t0054	3631	1	0	0	1	0	0	copy fasta	EBF1	chr5	158690920	159104916
EBF1_chr5_158690920_159104916	0/0	t0055	3632	1	0	0	1	0	0	copy fasta	EBF1	chr5	158690920	159104916
EBF1_chr5_158690920_159104916	0/0	t0056	3631	1	1	0	0	0	0	copy fasta	EBF1	chr5	158690920	159104916
EBF1_chr5_158690920_159104916	0/0	t0057	3632	1	0	1	0	0	0	copy fasta	EBF1	chr5	158690920	159104916
EBF1_chr5_158690920_159104916	0/0	t0058	3630	1	1	0	0	0	0	copy fasta	EBF1	chr5	158690920	159104916
EBF1_chr5_158690920_159104916	0/0	t0059	3630	1	1	0	0	0	0	copy fasta	EBF1	chr5	158690920	159104916
EBF1_chr5_158690920_159104916	0/0	t0060	3629	1	0	1	0	0	0	copy fasta	EBF1	chr5	158690920	159104916
EBF1_chr5_158690920_159104916	0/0	t0061	3630	1	0	1	0	0	0	copy fasta	EBF1	chr5	158690920	159104916
EBF1_chr5_158690920_159104916	0/0	t0062	3629	1	1	0	0	0	0	copy fasta	EBF1	chr5	158690920	159104916
EBF1_chr5_158690920_159104916	0/0	t0063	3630	1	1	0	0	0	0	copy fasta	EBF1	chr5	158690920	159104916
EBF1_chr5_158690920_159104916	0/0	t0064	3631	1	0	1	0	0	0	copy fasta	EBF1	chr5	158690920	159104916
EBF1_chr5_158690920_159104916	0/0	t0065	3630	1	0	0	1	0	0	copy fasta	EBF1	chr5	158690920	159104916
EBF1_chr5_158690920_159104916	0/0	t0066	3631	1	1	0	0	0	0	copy fasta	EBF1	chr5	158690920	159104916
EBF1_chr5_158690920_159104916	0/0	t0067	3632	1	1	0	0	0	0	copy fasta	EBF1	chr5	158690920	159104916
EBF1_chr5_158690920_159104916	0/0	t0068	3632	1	0	0	1	0	0	copy fasta	EBF1	chr5	158690920	159104916
EBF1_chr5_158690920_159104916	0/0	t0069	3631	1	1	0	0	0	0	copy fasta	EBF1	chr5	158690920	159104916
EBF1_chr5_158690920_159104916	0/0	t0070	3631	1	1	0	0	0	0	copy fasta	EBF1	chr5	158690920	159104916
EBF1_chr5_158690920_159104916	0/0	t0071	3630	1	0	0	1	0	0	copy fasta	EBF1	chr5	158690920	159104916
EBF1_chr5_158690920_159104916	0/0	t0072	3631	1	0	1	0	0	0	copy fasta	EBF1	chr5	158690920	159104916
EBF1_chr5_158690920_159104916	0/0	t0073	3667	1	0	0	1	0	0	copy fasta	EBF1	chr5	158690920	159104916
EBF1_chr5_158690920_159104916	0/0	t0074	3631	1	1	0	0	0	0	copy fasta	EBF1	chr5	158690920	159104916
EBF1_chr5_158690920_159104916	0/0	t0075	3630	1	0	0	1	0	0	copy fasta	EBF1	chr5	158690920	159104916
EBF1_chr5_158690920_159104916	0/0	t0076	3629	1	1	0	0	0	0	copy fasta	EBF1	chr5	158690920	159104916