JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
EBF1_chr5_158690920_159104916	0/0	t0077	3629	1	1	0	0	0	0	copy fasta	EBF1	chr5	158690920	159104916
EBF1_chr5_158690920_159104916	0/0	t0078	3629	1	1	0	0	0	0	copy fasta	EBF1	chr5	158690920	159104916
EBF1_chr5_158690920_159104916	0/0	t0079	3629	1	1	0	0	0	0	copy fasta	EBF1	chr5	158690920	159104916
EBF1_chr5_158690920_159104916	0/0	t0080	3628	1	1	0	0	0	0	copy fasta	EBF1	chr5	158690920	159104916
EBF1_chr5_158690920_159104916	0/0	t0081	3630	1	1	0	0	0	0	copy fasta	EBF1	chr5	158690920	159104916
EBF1_chr5_158690920_159104916	0/0	t0082	3629	1	1	0	0	0	0	copy fasta	EBF1	chr5	158690920	159104916
EBF1_chr5_158690920_159104916	0/0	t0083	3627	1	1	0	0	0	0	copy fasta	EBF1	chr5	158690920	159104916
EBF1_chr5_158690920_159104916	0/0	t0084	3628	1	0	0	1	0	0	copy fasta	EBF1	chr5	158690920	159104916
EBF1_chr5_158690920_159104916	0/0	t0085	3628	1	0	0	1	0	0	copy fasta	EBF1	chr5	158690920	159104916
EBF1_chr5_158690920_159104916	0/0	t0086	3628	1	0	1	0	0	0	copy fasta	EBF1	chr5	158690920	159104916
EBF1_chr5_158690920_159104916	0/0	t0087	3625	1	1	0	0	0	0	copy fasta	EBF1	chr5	158690920	159104916
EBF1_chr5_158690920_159104916	0/0	t0088	3629	1	1	0	0	0	0	copy fasta	EBF1	chr5	158690920	159104916
EBF1_chr5_158690920_159104916	0/0	t0089	3630	1	1	0	0	0	0	copy fasta	EBF1	chr5	158690920	159104916
EBF1_chr5_158690920_159104916	0/0	t0090	3629	1	1	0	0	0	0	copy fasta	EBF1	chr5	158690920	159104916
EBF1_chr5_158690920_159104916	0/0	t0091	3629	1	0	0	0	1	0	copy fasta	EBF1	chr5	158690920	159104916
EBF1_chr5_158690920_159104916	0/0	t0092	3627	1	1	0	0	0	0	copy fasta	EBF1	chr5	158690920	159104916
EBF1_chr5_158690920_159104916	0/0	t0093	3630	1	1	0	0	0	0	copy fasta	EBF1	chr5	158690920	159104916
EBF1_chr5_158690920_159104916	0/0	t0094	3629	1	1	0	0	0	0	copy fasta	EBF1	chr5	158690920	159104916
EBF1_chr5_158690920_159104916	0/0	t0095	3632	1	1	0	0	0	0	copy fasta	EBF1	chr5	158690920	159104916
EBF2_chr8_25836725_26050413	1/0	t0001	3439	65	14	14	24	4	8	copy fasta	EBF2	chr8	25836725	26050413
EBF2_chr8_25836725_26050413	0/1	t0002	3439	38	10	8	11	3	5	copy fasta	EBF2	chr8	25836725	26050413
EBF2_chr8_25836725_26050413	0/0	t0003	3441	33	8	8	14	1	2	copy fasta	EBF2	chr8	25836725	26050413
EBF2_chr8_25836725_26050413	0/0	t0004	3439	10	0	5	5	0	0	copy fasta	EBF2	chr8	25836725	26050413
EBF2_chr8_25836725_26050413	0/0	t0005	3439	10	10	0	0	0	0	copy fasta	EBF2	chr8	25836725	26050413
EBF2_chr8_25836725_26050413	0/0	t0006	3441	9	1	2	4	1	1	copy fasta	EBF2	chr8	25836725	26050413
EBF2_chr8_25836725_26050413	0/0	t0007	3441	5	5	0	0	0	0	copy fasta	EBF2	chr8	25836725	26050413
EBF2_chr8_25836725_26050413	0/0	t0008	3440	4	3	1	0	0	0	copy fasta	EBF2	chr8	25836725	26050413
EBF2_chr8_25836725_26050413	0/0	t0009	3438	3	1	1	0	0	1	copy fasta	EBF2	chr8	25836725	26050413
EBF2_chr8_25836725_26050413	0/0	t0010	3438	3	3	0	0	0	0	copy fasta	EBF2	chr8	25836725	26050413
EBF2_chr8_25836725_26050413	0/0	t0011	3441	3	3	0	0	0	0	copy fasta	EBF2	chr8	25836725	26050413
EBF2_chr8_25836725_26050413	0/0	t0012	3441	3	0	3	0	0	0	copy fasta	EBF2	chr8	25836725	26050413
EBF2_chr8_25836725_26050413	0/0	t0013	3439	2	1	1	0	0	0	copy fasta	EBF2	chr8	25836725	26050413
EBF2_chr8_25836725_26050413	0/0	t0014	3439	2	0	2	0	0	0	copy fasta	EBF2	chr8	25836725	26050413
EBF2_chr8_25836725_26050413	0/0	t0015	3439	2	0	0	2	0	0	copy fasta	EBF2	chr8	25836725	26050413
EBF2_chr8_25836725_26050413	0/0	t0016	3441	2	2	0	0	0	0	copy fasta	EBF2	chr8	25836725	26050413
EBF2_chr8_25836725_26050413	0/0	t0017	3441	1	0	0	0	0	1	copy fasta	EBF2	chr8	25836725	26050413
EBF2_chr8_25836725_26050413	0/0	t0018	3438	1	1	0	0	0	0	copy fasta	EBF2	chr8	25836725	26050413
EBF2_chr8_25836725_26050413	0/0	t0019	3439	1	1	0	0	0	0	copy fasta	EBF2	chr8	25836725	26050413
EBF2_chr8_25836725_26050413	0/0	t0020	3439	1	1	0	0	0	0	copy fasta	EBF2	chr8	25836725	26050413
EBF2_chr8_25836725_26050413	0/0	t0021	3439	1	1	0	0	0	0	copy fasta	EBF2	chr8	25836725	26050413
EBF2_chr8_25836725_26050413	0/0	t0022	3439	1	0	0	0	0	1	copy fasta	EBF2	chr8	25836725	26050413
EBF2_chr8_25836725_26050413	0/0	t0023	3439	1	0	0	1	0	0	copy fasta	EBF2	chr8	25836725	26050413
EBF2_chr8_25836725_26050413	0/0	t0024	3439	1	0	0	1	0	0	copy fasta	EBF2	chr8	25836725	26050413
EBF2_chr8_25836725_26050413	0/0	t0025	3439	1	0	0	0	1	0	copy fasta	EBF2	chr8	25836725	26050413
EBF2_chr8_25836725_26050413	0/0	t0026	3439	1	0	0	0	0	1	copy fasta	EBF2	chr8	25836725	26050413
EBF2_chr8_25836725_26050413	0/0	t0027	3439	1	1	0	0	0	0	copy fasta	EBF2	chr8	25836725	26050413
EBF2_chr8_25836725_26050413	0/0	t0028	3439	1	0	1	0	0	0	copy fasta	EBF2	chr8	25836725	26050413
EBF2_chr8_25836725_26050413	0/0	t0029	3439	1	0	0	0	0	1	copy fasta	EBF2	chr8	25836725	26050413
EBF2_chr8_25836725_26050413	0/0	t0030	3439	1	0	0	0	1	0	copy fasta	EBF2	chr8	25836725	26050413
EBF2_chr8_25836725_26050413	0/0	t0031	3439	1	1	0	0	0	0	copy fasta	EBF2	chr8	25836725	26050413