JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
EBF2_chr8_25836725_26050413	0/0	t0032	3440	1	0	0	0	0	1	copy fasta	EBF2	chr8	25836725	26050413
EBF2_chr8_25836725_26050413	0/0	t0033	3440	1	1	0	0	0	0	copy fasta	EBF2	chr8	25836725	26050413
EBF2_chr8_25836725_26050413	0/0	t0034	3440	1	0	0	0	1	0	copy fasta	EBF2	chr8	25836725	26050413
EBF2_chr8_25836725_26050413	0/0	t0035	3440	1	1	0	0	0	0	copy fasta	EBF2	chr8	25836725	26050413
EBF2_chr8_25836725_26050413	0/0	t0036	3440	1	1	0	0	0	0	copy fasta	EBF2	chr8	25836725	26050413
EBF2_chr8_25836725_26050413	0/0	t0037	3440	1	1	0	0	0	0	copy fasta	EBF2	chr8	25836725	26050413
EBF2_chr8_25836725_26050413	0/0	t0038	3441	1	1	0	0	0	0	copy fasta	EBF2	chr8	25836725	26050413
EBF2_chr8_25836725_26050413	0/0	t0039	3441	1	1	0	0	0	0	copy fasta	EBF2	chr8	25836725	26050413
EBF2_chr8_25836725_26050413	0/0	t0040	3441	1	0	0	1	0	0	copy fasta	EBF2	chr8	25836725	26050413
EBF2_chr8_25836725_26050413	0/0	t0041	3441	1	0	0	1	0	0	copy fasta	EBF2	chr8	25836725	26050413
EBF2_chr8_25836725_26050413	0/0	t0042	3439	1	1	0	0	0	0	copy fasta	EBF2	chr8	25836725	26050413
EBF3_chr10_129830233_129969274	0/0	t0001	3217	68	28	13	16	5	6	copy fasta	EBF3	chr10	129830233	129969274
EBF3_chr10_129830233_129969274	0/1	t0002	3219	59	4	12	32	2	8	copy fasta	EBF3	chr10	129830233	129969274
EBF3_chr10_129830233_129969274	0/0	t0003	3218	46	1	5	36	1	3	copy fasta	EBF3	chr10	129830233	129969274
EBF3_chr10_129830233_129969274	0/0	t0004	3218	33	6	1	21	0	5	copy fasta	EBF3	chr10	129830233	129969274
EBF3_chr10_129830233_129969274	0/0	t0005	3219	15	1	3	4	2	5	copy fasta	EBF3	chr10	129830233	129969274
EBF3_chr10_129830233_129969274	1/0	t0006	3217	14	5	4	0	1	3	copy fasta	EBF3	chr10	129830233	129969274
EBF3_chr10_129830233_129969274	0/0	t0007	3219	14	13	1	0	0	0	copy fasta	EBF3	chr10	129830233	129969274
EBF3_chr10_129830233_129969274	0/0	t0008	3219	11	0	10	0	1	0	copy fasta	EBF3	chr10	129830233	129969274
EBF3_chr10_129830233_129969274	0/0	t0009	3217	7	0	0	7	0	0	copy fasta	EBF3	chr10	129830233	129969274
EBF3_chr10_129830233_129969274	0/0	t0010	3217	5	3	2	0	0	0	copy fasta	EBF3	chr10	129830233	129969274
EBF3_chr10_129830233_129969274	0/0	t0011	3219	3	3	0	0	0	0	copy fasta	EBF3	chr10	129830233	129969274
EBF3_chr10_129830233_129969274	0/0	t0012	3218	3	0	0	2	0	1	copy fasta	EBF3	chr10	129830233	129969274
EBF3_chr10_129830233_129969274	0/0	t0013	3218	3	0	0	3	0	0	copy fasta	EBF3	chr10	129830233	129969274
EBF3_chr10_129830233_129969274	0/0	t0014	3218	3	2	1	0	0	0	copy fasta	EBF3	chr10	129830233	129969274
EBF3_chr10_129830233_129969274	0/0	t0015	3218	3	0	0	3	0	0	copy fasta	EBF3	chr10	129830233	129969274
EBF3_chr10_129830233_129969274	0/0	t0016	3215	2	2	0	0	0	0	copy fasta	EBF3	chr10	129830233	129969274
EBF3_chr10_129830233_129969274	0/0	t0017	3217	2	2	0	0	0	0	copy fasta	EBF3	chr10	129830233	129969274
EBF3_chr10_129830233_129969274	0/0	t0018	3216	2	1	0	1	0	0	copy fasta	EBF3	chr10	129830233	129969274
EBF3_chr10_129830233_129969274	0/0	t0019	3217	2	2	0	0	0	0	copy fasta	EBF3	chr10	129830233	129969274
EBF3_chr10_129830233_129969274	0/0	t0020	3217	2	2	0	0	0	0	copy fasta	EBF3	chr10	129830233	129969274
EBF3_chr10_129830233_129969274	0/0	t0021	3218	2	0	0	2	0	0	copy fasta	EBF3	chr10	129830233	129969274
EBF3_chr10_129830233_129969274	0/0	t0022	3217	2	2	0	0	0	0	copy fasta	EBF3	chr10	129830233	129969274
EBF3_chr10_129830233_129969274	0/0	t0023	3217	2	1	1	0	0	0	copy fasta	EBF3	chr10	129830233	129969274
EBF3_chr10_129830233_129969274	0/0	t0024	3219	2	2	0	0	0	0	copy fasta	EBF3	chr10	129830233	129969274
EBF3_chr10_129830233_129969274	0/0	t0025	3217	2	2	0	0	0	0	copy fasta	EBF3	chr10	129830233	129969274
EBF3_chr10_129830233_129969274	0/0	t0026	3218	2	0	0	1	0	1	copy fasta	EBF3	chr10	129830233	129969274
EBF3_chr10_129830233_129969274	0/0	t0027	3217	1	1	0	0	0	0	copy fasta	EBF3	chr10	129830233	129969274
EBF3_chr10_129830233_129969274	0/0	t0028	3217	1	0	0	0	0	1	copy fasta	EBF3	chr10	129830233	129969274
EBF3_chr10_129830233_129969274	0/0	t0029	3218	1	0	1	0	0	0	copy fasta	EBF3	chr10	129830233	129969274
EBF3_chr10_129830233_129969274	0/0	t0030	3219	1	0	0	1	0	0	copy fasta	EBF3	chr10	129830233	129969274
EBF3_chr10_129830233_129969274	0/0	t0031	3219	1	0	0	1	0	0	copy fasta	EBF3	chr10	129830233	129969274
EBF3_chr10_129830233_129969274	0/0	t0032	3220	1	0	1	0	0	0	copy fasta	EBF3	chr10	129830233	129969274
EBF3_chr10_129830233_129969274	0/0	t0033	3220	1	0	0	0	0	1	copy fasta	EBF3	chr10	129830233	129969274
EBF3_chr10_129830233_129969274	0/0	t0034	3219	1	0	0	0	0	1	copy fasta	EBF3	chr10	129830233	129969274
EBF3_chr10_129830233_129969274	0/0	t0035	3216	1	1	0	0	0	0	copy fasta	EBF3	chr10	129830233	129969274
EBF3_chr10_129830233_129969274	0/0	t0036	3215	1	1	0	0	0	0	copy fasta	EBF3	chr10	129830233	129969274
EBF3_chr10_129830233_129969274	0/0	t0037	3219	1	0	1	0	0	0	copy fasta	EBF3	chr10	129830233	129969274
EBF3_chr10_129830233_129969274	0/0	t0038	3218	1	0	0	1	0	0	copy fasta	EBF3	chr10	129830233	129969274
EBF3_chr10_129830233_129969274	0/0	t0039	3219	1	0	0	0	0	1	copy fasta	EBF3	chr10	129830233	129969274