JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
EBF3_chr10_129830233_129969274	0/0	t0040	3219	1	0	0	1	0	0	copy fasta	EBF3	chr10	129830233	129969274
EBF3_chr10_129830233_129969274	0/0	t0041	3217	1	1	0	0	0	0	copy fasta	EBF3	chr10	129830233	129969274
EBF3_chr10_129830233_129969274	0/0	t0042	3209	1	0	1	0	0	0	copy fasta	EBF3	chr10	129830233	129969274
EBF3_chr10_129830233_129969274	0/0	t0043	3218	1	0	0	1	0	0	copy fasta	EBF3	chr10	129830233	129969274
EBF3_chr10_129830233_129969274	0/0	t0044	3219	1	0	0	1	0	0	copy fasta	EBF3	chr10	129830233	129969274
EBF3_chr10_129830233_129969274	0/0	t0045	3218	1	0	0	1	0	0	copy fasta	EBF3	chr10	129830233	129969274
EBF3_chr10_129830233_129969274	0/0	t0046	3218	1	0	0	1	0	0	copy fasta	EBF3	chr10	129830233	129969274
EBF3_chr10_129830233_129969274	0/0	t0047	3255	1	1	0	0	0	0	copy fasta	EBF3	chr10	129830233	129969274
EBF3_chr10_129830233_129969274	0/0	t0048	3255	1	1	0	0	0	0	copy fasta	EBF3	chr10	129830233	129969274
EBF3_chr10_129830233_129969274	0/0	t0049	3256	1	1	0	0	0	0	copy fasta	EBF3	chr10	129830233	129969274
EBF3_chr10_129830233_129969274	0/0	t0050	3257	1	1	0	0	0	0	copy fasta	EBF3	chr10	129830233	129969274
EBF3_chr10_129830233_129969274	0/0	t0051	3217	1	1	0	0	0	0	copy fasta	EBF3	chr10	129830233	129969274
EBF3_chr10_129830233_129969274	0/0	t0052	3217	1	1	0	0	0	0	copy fasta	EBF3	chr10	129830233	129969274
EBF3_chr10_129830233_129969274	0/0	t0053	3216	1	1	0	0	0	0	copy fasta	EBF3	chr10	129830233	129969274
EBF3_chr10_129830233_129969274	0/0	t0054	3219	1	0	1	0	0	0	copy fasta	EBF3	chr10	129830233	129969274
EBF3_chr10_129830233_129969274	0/0	t0055	3219	1	1	0	0	0	0	copy fasta	EBF3	chr10	129830233	129969274
EBF4_chr20_2687780_2765108	0/0	t0001	1704	149	70	27	41	2	9	copy fasta	EBF4	chr20	2687780	2765108
EBF4_chr20_2687780_2765108	0/0	t0002	1707	137	9	25	72	9	22	copy fasta	EBF4	chr20	2687780	2765108
EBF4_chr20_2687780_2765108	0/1	t0003	1704	79	9	6	52	2	9	copy fasta	EBF4	chr20	2687780	2765108
EBF4_chr20_2687780_2765108	0/0	t0004	1707	5	0	5	0	0	0	copy fasta	EBF4	chr20	2687780	2765108
EBF4_chr20_2687780_2765108	1/0	t0005	1713	2	0	0	0	0	1	copy fasta	EBF4	chr20	2687780	2765108
EBF4_chr20_2687780_2765108	0/0	t0006	1707	2	0	0	0	2	0	copy fasta	EBF4	chr20	2687780	2765108
EBF4_chr20_2687780_2765108	0/0	t0007	1704	2	2	0	0	0	0	copy fasta	EBF4	chr20	2687780	2765108
EBF4_chr20_2687780_2765108	0/0	t0008	1704	2	1	1	0	0	0	copy fasta	EBF4	chr20	2687780	2765108
EBF4_chr20_2687780_2765108	0/0	t0009	1713	1	0	0	1	0	0	copy fasta	EBF4	chr20	2687780	2765108
EBF4_chr20_2687780_2765108	0/0	t0010	1707	1	0	1	0	0	0	copy fasta	EBF4	chr20	2687780	2765108
EBF4_chr20_2687780_2765108	0/0	t0011	1707	1	1	0	0	0	0	copy fasta	EBF4	chr20	2687780	2765108
EBF4_chr20_2687780_2765108	0/0	t0012	1707	1	0	0	0	0	1	copy fasta	EBF4	chr20	2687780	2765108
EBF4_chr20_2687780_2765108	0/0	t0013	1710	1	0	0	1	0	0	copy fasta	EBF4	chr20	2687780	2765108
EBF4_chr20_2687780_2765108	0/0	t0014	1704	1	0	0	0	1	0	copy fasta	EBF4	chr20	2687780	2765108
EBF4_chr20_2687780_2765108	0/0	t0015	1704	1	0	0	0	0	1	copy fasta	EBF4	chr20	2687780	2765108
EBF4_chr20_2687780_2765108	0/0	t0016	1704	1	0	0	0	0	1	copy fasta	EBF4	chr20	2687780	2765108
EBF4_chr20_2687780_2765108	0/0	t0017	1691	1	0	0	1	0	0	copy fasta	EBF4	chr20	2687780	2765108
EBF4_chr20_2687780_2765108	0/0	t0018	1704	1	0	1	0	0	0	copy fasta	EBF4	chr20	2687780	2765108
EBI3_chr19_4224523_4242528	1/1	t0001	469	267	55	57	114	9	30	copy fasta	EBI3	chr19	4224523	4242528
EBI3_chr19_4224523_4242528	0/0	t0002	469	166	34	22	84	7	19	copy fasta	EBI3	chr19	4224523	4242528
EBI3_chr19_4224523_4242528	0/0	t0003	469	2	2	0	0	0	0	copy fasta	EBI3	chr19	4224523	4242528
EBI3_chr19_4224523_4242528	0/0	t0004	469	1	0	0	0	0	1	copy fasta	EBI3	chr19	4224523	4242528
EBI3_chr19_4224523_4242528	0/0	t0005	469	1	1	0	0	0	0	copy fasta	EBI3	chr19	4224523	4242528
EBI3_chr19_4224523_4242528	0/0	t0006	469	1	0	1	0	0	0	copy fasta	EBI3	chr19	4224523	4242528
EBLN1_chr10_22203475_22223015	1/0	t0001	677	274	21	45	161	14	32	copy fasta	EBLN1	chr10	22203475	22223015
EBLN1_chr10_22203475_22223015	0/1	t0002	677	105	27	25	44	3	5	copy fasta	EBLN1	chr10	22203475	22223015
EBLN1_chr10_22203475_22223015	0/0	t0003	677	26	24	2	0	0	0	copy fasta	EBLN1	chr10	22203475	22223015
EBLN1_chr10_22203475_22223015	0/0	t0004	677	10	9	1	0	0	0	copy fasta	EBLN1	chr10	22203475	22223015
EBLN1_chr10_22203475_22223015	0/0	t0005	677	5	5	0	0	0	0	copy fasta	EBLN1	chr10	22203475	22223015
EBLN1_chr10_22203475_22223015	0/0	t0006	677	4	4	0	0	0	0	copy fasta	EBLN1	chr10	22203475	22223015
EBLN1_chr10_22203475_22223015	0/0	t0007	677	3	3	0	0	0	0	copy fasta	EBLN1	chr10	22203475	22223015
EBLN1_chr10_22203475_22223015	0/0	t0008	677	1	0	0	1	0	0	copy fasta	EBLN1	chr10	22203475	22223015
EBLN1_chr10_22203475_22223015	0/0	t0009	677	1	0	1	0	0	0	copy fasta	EBLN1	chr10	22203475	22223015
EBLN1_chr10_22203475_22223015	0/0	t0010	677	1	0	0	0	1	0	copy fasta	EBLN1	chr10	22203475	22223015