JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
EBLN1_chr10_22203475_22223015	0/0	t0011	677	1	0	0	0	0	1	copy fasta	EBLN1	chr10	22203475	22223015
EBLN1_chr10_22203475_22223015	0/0	t0012	677	1	1	0	0	0	0	copy fasta	EBLN1	chr10	22203475	22223015
EBLN2_chr3_73056659_73068337	1/0	t0001	861	180	23	45	97	3	11	copy fasta	EBLN2	chr3	73056659	73068337
EBLN2_chr3_73056659_73068337	0/1	t0002	861	128	16	19	64	3	25	copy fasta	EBLN2	chr3	73056659	73068337
EBLN2_chr3_73056659_73068337	0/0	t0003	861	42	9	5	22	2	4	copy fasta	EBLN2	chr3	73056659	73068337
EBLN2_chr3_73056659_73068337	0/0	t0004	862	14	10	2	2	0	0	copy fasta	EBLN2	chr3	73056659	73068337
EBLN2_chr3_73056659_73068337	0/0	t0005	861	14	14	0	0	0	0	copy fasta	EBLN2	chr3	73056659	73068337
EBLN2_chr3_73056659_73068337	0/0	t0006	860	10	0	4	4	0	2	copy fasta	EBLN2	chr3	73056659	73068337
EBLN2_chr3_73056659_73068337	0/0	t0007	863	8	8	0	0	0	0	copy fasta	EBLN2	chr3	73056659	73068337
EBLN2_chr3_73056659_73068337	0/0	t0008	861	5	5	0	0	0	0	copy fasta	EBLN2	chr3	73056659	73068337
EBLN2_chr3_73056659_73068337	0/0	t0009	862	3	0	0	3	0	0	copy fasta	EBLN2	chr3	73056659	73068337
EBLN2_chr3_73056659_73068337	0/0	t0010	862	3	3	0	0	0	0	copy fasta	EBLN2	chr3	73056659	73068337
EBLN2_chr3_73056659_73068337	0/0	t0011	861	3	3	0	0	0	0	copy fasta	EBLN2	chr3	73056659	73068337
EBLN2_chr3_73056659_73068337	0/0	t0012	861	3	3	0	0	0	0	copy fasta	EBLN2	chr3	73056659	73068337
EBLN2_chr3_73056659_73068337	0/0	t0013	861	2	0	0	2	0	0	copy fasta	EBLN2	chr3	73056659	73068337
EBLN2_chr3_73056659_73068337	0/0	t0014	861	2	0	0	0	0	2	copy fasta	EBLN2	chr3	73056659	73068337
EBLN2_chr3_73056659_73068337	0/0	t0015	861	2	2	0	0	0	0	copy fasta	EBLN2	chr3	73056659	73068337
EBLN2_chr3_73056659_73068337	0/0	t0016	863	1	1	0	0	0	0	copy fasta	EBLN2	chr3	73056659	73068337
EBLN2_chr3_73056659_73068337	0/0	t0017	861	1	1	0	0	0	0	copy fasta	EBLN2	chr3	73056659	73068337
EBLN2_chr3_73056659_73068337	0/0	t0018	861	1	0	1	0	0	0	copy fasta	EBLN2	chr3	73056659	73068337
EBLN2_chr3_73056659_73068337	0/0	t0019	861	1	1	0	0	0	0	copy fasta	EBLN2	chr3	73056659	73068337
EBLN2_chr3_73056659_73068337	0/0	t0020	861	1	0	1	0	0	0	copy fasta	EBLN2	chr3	73056659	73068337
EBLN2_chr3_73056659_73068337	0/0	t0021	862	1	0	1	0	0	0	copy fasta	EBLN2	chr3	73056659	73068337
EBLN2_chr3_73056659_73068337	0/0	t0022	862	1	0	0	1	0	0	copy fasta	EBLN2	chr3	73056659	73068337
EBLN2_chr3_73056659_73068337	0/0	t0023	861	1	1	0	0	0	0	copy fasta	EBLN2	chr3	73056659	73068337
EBLN2_chr3_73056659_73068337	0/0	t0024	861	1	0	0	1	0	0	copy fasta	EBLN2	chr3	73056659	73068337
EBNA1BP2_chr1_43159184_43177290	1/0	t0001	432	312	63	56	151	8	33	copy fasta	EBNA1BP2	chr1	43159184	43177290
EBNA1BP2_chr1_43159184_43177290	0/1	t0002	432	49	13	15	5	7	8	copy fasta	EBNA1BP2	chr1	43159184	43177290
EBNA1BP2_chr1_43159184_43177290	0/0	t0003	432	22	16	4	0	1	1	copy fasta	EBNA1BP2	chr1	43159184	43177290
EBNA1BP2_chr1_43159184_43177290	0/0	t0004	432	5	0	1	0	0	4	copy fasta	EBNA1BP2	chr1	43159184	43177290
EBNA1BP2_chr1_43159184_43177290	0/0	t0005	432	4	4	0	0	0	0	copy fasta	EBNA1BP2	chr1	43159184	43177290
EBPL_chr13_49655674_49696486	1/1	t0001	357	410	96	82	172	10	48	copy fasta	EBPL	chr13	49655674	49696486
EBP_chrX_48516808_48533716	1/1	t0001	433	169	47	36	59	3	22	copy fasta	EBP	chrX	48516808	48533716
EBP_chrX_48516808_48533716	0/0	t0002	434	100	17	14	59	3	7	copy fasta	EBP	chrX	48516808	48533716
EBP_chrX_48516808_48533716	0/0	t0003	435	25	8	2	13	0	2	copy fasta	EBP	chrX	48516808	48533716
EBP_chrX_48516808_48533716	0/0	t0004	434	7	6	1	0	0	0	copy fasta	EBP	chrX	48516808	48533716
EBP_chrX_48516808_48533716	0/0	t0005	432	3	1	0	2	0	0	copy fasta	EBP	chrX	48516808	48533716
EBP_chrX_48516808_48533716	0/0	t0006	435	1	0	0	1	0	0	copy fasta	EBP	chrX	48516808	48533716
EBP_chrX_48516808_48533716	0/0	t0007	433	1	1	0	0	0	0	copy fasta	EBP	chrX	48516808	48533716
EBP_chrX_48516808_48533716	0/0	t0008	435	1	1	0	0	0	0	copy fasta	EBP	chrX	48516808	48533716
EBP_chrX_48516808_48533716	0/0	t0009	436	1	0	0	1	0	0	copy fasta	EBP	chrX	48516808	48533716
EBP_chrX_48516808_48533716	0/0	t0010	437	1	0	0	0	1	0	copy fasta	EBP	chrX	48516808	48533716
EBP_chrX_48516808_48533716	0/0	t0011	438	1	0	0	0	0	1	copy fasta	EBP	chrX	48516808	48533716
EBP_chrX_48516808_48533716	0/0	t0012	435	1	1	0	0	0	0	copy fasta	EBP	chrX	48516808	48533716
ECD_chr10_73128668_73173008	1/1	t0001	1072	160	44	20	75	0	19	copy fasta	ECD	chr10	73128668	73173008
ECD_chr10_73128668_73173008	0/0	t0002	1072	65	4	5	47	0	9	copy fasta	ECD	chr10	73128668	73173008
ECD_chr10_73128668_73173008	0/0	t0003	1072	35	30	5	0	0	0	copy fasta	ECD	chr10	73128668	73173008
ECD_chr10_73128668_73173008	0/0	t0004	1072	6	0	0	6	0	0	copy fasta	ECD	chr10	73128668	73173008
ECD_chr10_73128668_73173008	0/0	t0005	1072	6	6	0	0	0	0	copy fasta	ECD	chr10	73128668	73173008
ECE1_chr1_21212250_21295463	1/0	t0001	2755	125	18	26	60	3	17	copy fasta	ECE1	chr1	21212250	21295463