JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ECE1_chr1_21212250_21295463	0/0	t0002	2755	53	18	16	12	3	4	copy fasta	ECE1	chr1	21212250	21295463
ECE1_chr1_21212250_21295463	0/1	t0003	2755	43	7	2	21	3	9	copy fasta	ECE1	chr1	21212250	21295463
ECE1_chr1_21212250_21295463	0/0	t0004	2755	22	19	3	0	0	0	copy fasta	ECE1	chr1	21212250	21295463
ECE1_chr1_21212250_21295463	0/0	t0005	2755	8	7	1	0	0	0	copy fasta	ECE1	chr1	21212250	21295463
ECE1_chr1_21212250_21295463	0/0	t0006	2755	7	0	1	0	3	3	copy fasta	ECE1	chr1	21212250	21295463
ECE1_chr1_21212250_21295463	0/0	t0007	2755	7	6	1	0	0	0	copy fasta	ECE1	chr1	21212250	21295463
ECE1_chr1_21212250_21295463	0/0	t0008	2753	4	0	0	4	0	0	copy fasta	ECE1	chr1	21212250	21295463
ECE1_chr1_21212250_21295463	0/0	t0009	2755	3	3	0	0	0	0	copy fasta	ECE1	chr1	21212250	21295463
ECE1_chr1_21212250_21295463	0/0	t0010	2755	2	2	0	0	0	0	copy fasta	ECE1	chr1	21212250	21295463
ECE1_chr1_21212250_21295463	0/0	t0011	2755	2	2	0	0	0	0	copy fasta	ECE1	chr1	21212250	21295463
ECE1_chr1_21212250_21295463	0/0	t0012	2755	2	2	0	0	0	0	copy fasta	ECE1	chr1	21212250	21295463
ECE1_chr1_21212250_21295463	0/0	t0013	2755	2	0	2	0	0	0	copy fasta	ECE1	chr1	21212250	21295463
ECE1_chr1_21212250_21295463	0/0	t0014	2755	2	2	0	0	0	0	copy fasta	ECE1	chr1	21212250	21295463
ECE1_chr1_21212250_21295463	0/0	t0015	2755	1	0	1	0	0	0	copy fasta	ECE1	chr1	21212250	21295463
ECE1_chr1_21212250_21295463	0/0	t0016	2755	1	0	0	0	1	0	copy fasta	ECE1	chr1	21212250	21295463
ECE1_chr1_21212250_21295463	0/0	t0017	2755	1	1	0	0	0	0	copy fasta	ECE1	chr1	21212250	21295463
ECE1_chr1_21212250_21295463	0/0	t0018	2755	1	0	0	1	0	0	copy fasta	ECE1	chr1	21212250	21295463
ECE1_chr1_21212250_21295463	0/0	t0019	2755	1	0	0	1	0	0	copy fasta	ECE1	chr1	21212250	21295463
ECE1_chr1_21212250_21295463	0/0	t0020	2755	1	1	0	0	0	0	copy fasta	ECE1	chr1	21212250	21295463
ECE1_chr1_21212250_21295463	0/0	t0021	2755	1	0	1	0	0	0	copy fasta	ECE1	chr1	21212250	21295463
ECE1_chr1_21212250_21295463	0/0	t0022	2755	1	0	0	0	0	1	copy fasta	ECE1	chr1	21212250	21295463
ECE1_chr1_21212250_21295463	0/0	t0023	2755	1	1	0	0	0	0	copy fasta	ECE1	chr1	21212250	21295463
ECE1_chr1_21212250_21295463	0/0	t0024	2755	1	1	0	0	0	0	copy fasta	ECE1	chr1	21212250	21295463
ECE1_chr1_21212250_21295463	0/0	t0025	2755	1	0	0	1	0	0	copy fasta	ECE1	chr1	21212250	21295463
ECE1_chr1_21212250_21295463	0/0	t0026	2755	1	0	0	1	0	0	copy fasta	ECE1	chr1	21212250	21295463
ECE1_chr1_21212250_21295463	0/0	t0027	2783	1	0	0	0	1	0	copy fasta	ECE1	chr1	21212250	21295463
ECE1_chr1_21212250_21295463	0/0	t0028	2755	1	1	0	0	0	0	copy fasta	ECE1	chr1	21212250	21295463
ECE1_chr1_21212250_21295463	0/0	t0029	2755	1	0	0	1	0	0	copy fasta	ECE1	chr1	21212250	21295463
ECE1_chr1_21212250_21295463	0/0	t0030	2755	1	0	0	1	0	0	copy fasta	ECE1	chr1	21212250	21295463
ECE1_chr1_21212250_21295463	0/0	t0031	2755	1	1	0	0	0	0	copy fasta	ECE1	chr1	21212250	21295463
ECE1_chr1_21212250_21295463	0/0	t0032	2755	1	0	0	1	0	0	copy fasta	ECE1	chr1	21212250	21295463
ECE1_chr1_21212250_21295463	0/0	t0033	2753	1	0	0	1	0	0	copy fasta	ECE1	chr1	21212250	21295463
ECE1_chr1_21212250_21295463	0/0	t0034	2755	1	1	0	0	0	0	copy fasta	ECE1	chr1	21212250	21295463
ECE1_chr1_21212250_21295463	0/0	t0035	2755	1	1	0	0	0	0	copy fasta	ECE1	chr1	21212250	21295463
ECE1_chr1_21212250_21295463	0/0	t0036	2755	1	0	0	1	0	0	copy fasta	ECE1	chr1	21212250	21295463
ECE2_chr3_184271022_184298031	0/0	t0001	926	224	59	41	104	8	12	copy fasta	ECE2	chr3	184271022	184298031
ECE2_chr3_184271022_184298031	1/0	t0002	926	112	19	13	63	2	14	copy fasta	ECE2	chr3	184271022	184298031
ECE2_chr3_184271022_184298031	0/1	t0003	926	46	2	10	8	6	19	copy fasta	ECE2	chr3	184271022	184298031
ECE2_chr3_184271022_184298031	0/0	t0004	926	5	0	5	0	0	0	copy fasta	ECE2	chr3	184271022	184298031
ECE2_chr3_184271022_184298031	0/0	t0005	926	4	0	3	1	0	0	copy fasta	ECE2	chr3	184271022	184298031
ECE2_chr3_184271022_184298031	0/0	t0006	926	1	1	0	0	0	0	copy fasta	ECE2	chr3	184271022	184298031
ECE2_chr3_184271022_184298031	0/0	t0007	926	1	0	0	1	0	0	copy fasta	ECE2	chr3	184271022	184298031
ECE2_chr3_184271022_184298031	0/0	t0008	926	1	0	0	1	0	0	copy fasta	ECE2	chr3	184271022	184298031
ECE2_chr3_184271022_184298031	0/0	t0009	926	1	0	0	0	0	1	copy fasta	ECE2	chr3	184271022	184298031
ECE2_chr3_184271022_184298031	0/0	t0010	926	1	1	0	0	0	0	copy fasta	ECE2	chr3	184271022	184298031
ECE2_chr3_184271022_184298031	0/0	t0011	926	1	1	0	0	0	0	copy fasta	ECE2	chr3	184271022	184298031
ECE2_chr3_184271022_184298031	0/0	t0012	926	1	1	0	0	0	0	copy fasta	ECE2	chr3	184271022	184298031
ECEL1_chr2_232474827_232492834	1/0	t0001	544	301	82	49	119	13	37	copy fasta	ECEL1	chr2	232474827	232492834
ECEL1_chr2_232474827_232492834	0/1	t0002	544	129	9	23	78	5	13	copy fasta	ECEL1	chr2	232474827	232492834
ECEL1_chr2_232474827_232492834	0/0	t0003	544	5	5	0	0	0	0	copy fasta	ECEL1	chr2	232474827	232492834