JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ECEL1_chr2_232474827_232492834	0/0	t0004	544	2	0	0	2	0	0	copy fasta	ECEL1	chr2	232474827	232492834
ECEL1_chr2_232474827_232492834	0/0	t0005	544	1	0	0	1	0	0	copy fasta	ECEL1	chr2	232474827	232492834
ECH1_chr19_38810422_38836794	1/1	t0001	214	410	85	77	188	15	43	copy fasta	ECH1	chr19	38810422	38836794
ECH1_chr19_38810422_38836794	0/0	t0002	209	5	5	0	0	0	0	copy fasta	ECH1	chr19	38810422	38836794
ECH1_chr19_38810422_38836794	0/0	t0003	214	4	1	1	0	1	1	copy fasta	ECH1	chr19	38810422	38836794
ECH1_chr19_38810422_38836794	0/0	t0004	214	1	1	0	0	0	0	copy fasta	ECH1	chr19	38810422	38836794
ECHDC1_chr6_127283712_127348609	1/0	t0001	1434	225	61	30	109	5	19	copy fasta	ECHDC1	chr6	127283712	127348609
ECHDC1_chr6_127283712_127348609	0/1	t0002	1434	89	23	28	11	8	18	copy fasta	ECHDC1	chr6	127283712	127348609
ECHDC1_chr6_127283712_127348609	0/0	t0003	1434	27	11	2	8	3	3	copy fasta	ECHDC1	chr6	127283712	127348609
ECHDC1_chr6_127283712_127348609	0/0	t0004	1434	5	0	0	5	0	0	copy fasta	ECHDC1	chr6	127283712	127348609
ECHDC1_chr6_127283712_127348609	0/0	t0005	1434	4	0	0	3	0	1	copy fasta	ECHDC1	chr6	127283712	127348609
ECHDC1_chr6_127283712_127348609	0/0	t0006	1434	3	3	0	0	0	0	copy fasta	ECHDC1	chr6	127283712	127348609
ECHDC1_chr6_127283712_127348609	0/0	t0007	1434	2	0	0	2	0	0	copy fasta	ECHDC1	chr6	127283712	127348609
ECHDC1_chr6_127283712_127348609	0/0	t0008	1434	2	0	0	2	0	0	copy fasta	ECHDC1	chr6	127283712	127348609
ECHDC1_chr6_127283712_127348609	0/0	t0009	1434	1	0	0	0	0	1	copy fasta	ECHDC1	chr6	127283712	127348609
ECHDC2_chr1_52890910_52926740	1/0	t0001	678	213	35	31	124	4	18	copy fasta	ECHDC2	chr1	52890910	52926740
ECHDC2_chr1_52890910_52926740	0/1	t0002	678	43	15	13	2	2	10	copy fasta	ECHDC2	chr1	52890910	52926740
ECHDC2_chr1_52890910_52926740	0/0	t0003	678	30	12	6	8	0	4	copy fasta	ECHDC2	chr1	52890910	52926740
ECHDC2_chr1_52890910_52926740	0/0	t0004	678	19	19	0	0	0	0	copy fasta	ECHDC2	chr1	52890910	52926740
ECHDC2_chr1_52890910_52926740	0/0	t0005	678	8	8	0	0	0	0	copy fasta	ECHDC2	chr1	52890910	52926740
ECHDC2_chr1_52890910_52926740	0/0	t0006	678	1	1	0	0	0	0	copy fasta	ECHDC2	chr1	52890910	52926740
ECHDC3_chr10_11737382_11769070	0/1	t0001	723	290	51	54	140	13	31	copy fasta	ECHDC3	chr10	11737382	11769070
ECHDC3_chr10_11737382_11769070	0/0	t0002	723	87	2	17	53	5	10	copy fasta	ECHDC3	chr10	11737382	11769070
ECHDC3_chr10_11737382_11769070	1/0	t0003	722	32	29	2	0	0	0	copy fasta	ECHDC3	chr10	11737382	11769070
ECHDC3_chr10_11737382_11769070	0/0	t0004	723	2	2	0	0	0	0	copy fasta	ECHDC3	chr10	11737382	11769070
ECHDC3_chr10_11737382_11769070	0/0	t0005	723	2	0	0	2	0	0	copy fasta	ECHDC3	chr10	11737382	11769070
ECHDC3_chr10_11737382_11769070	0/0	t0006	723	2	2	0	0	0	0	copy fasta	ECHDC3	chr10	11737382	11769070
ECHDC3_chr10_11737382_11769070	0/0	t0007	723	1	0	1	0	0	0	copy fasta	ECHDC3	chr10	11737382	11769070
ECHDC3_chr10_11737382_11769070	0/0	t0008	723	1	1	0	0	0	0	copy fasta	ECHDC3	chr10	11737382	11769070
ECHDC3_chr10_11737382_11769070	0/0	t0009	722	1	1	0	0	0	0	copy fasta	ECHDC3	chr10	11737382	11769070
ECHDC3_chr10_11737382_11769070	0/0	t0010	723	1	0	0	1	0	0	copy fasta	ECHDC3	chr10	11737382	11769070
ECHDC3_chr10_11737382_11769070	0/0	t0011	723	1	0	0	0	0	1	copy fasta	ECHDC3	chr10	11737382	11769070
ECHS1_chr10_133357485_133378354	0/1	t0001	405	271	38	66	121	15	30	copy fasta	ECHS1	chr10	133357485	133378354
ECHS1_chr10_133357485_133378354	1/0	t0002	405	56	35	10	3	3	4	copy fasta	ECHS1	chr10	133357485	133378354
ECHS1_chr10_133357485_133378354	0/0	t0003	405	24	22	0	2	0	0	copy fasta	ECHS1	chr10	133357485	133378354
ECHS1_chr10_133357485_133378354	0/0	t0004	405	1	1	0	0	0	0	copy fasta	ECHS1	chr10	133357485	133378354
ECHS1_chr10_133357485_133378354	0/0	t0005	405	1	1	0	0	0	0	copy fasta	ECHS1	chr10	133357485	133378354
ECHS1_chr10_133357485_133378354	0/0	t0006	405	1	1	0	0	0	0	copy fasta	ECHS1	chr10	133357485	133378354
ECI1_chr16_2234402_2256587	1/1	t0001	599	421	89	72	200	13	45	copy fasta	ECI1	chr16	2234402	2256587
ECI1_chr16_2234402_2256587	0/0	t0002	599	8	2	4	0	1	1	copy fasta	ECI1	chr16	2234402	2256587
ECI1_chr16_2234402_2256587	0/0	t0003	599	5	5	0	0	0	0	copy fasta	ECI1	chr16	2234402	2256587
ECI1_chr16_2234402_2256587	0/0	t0004	599	2	2	0	0	0	0	copy fasta	ECI1	chr16	2234402	2256587
ECI2_chr6_4110706_4140575	1/1	t0001	184	360	82	71	162	12	31	copy fasta	ECI2	chr6	4110706	4140575
ECI2_chr6_4110706_4140575	0/0	t0002	184	5	5	0	0	0	0	copy fasta	ECI2	chr6	4110706	4140575
ECI2_chr6_4110706_4140575	0/0	t0003	184	2	0	1	0	0	1	copy fasta	ECI2	chr6	4110706	4140575
ECI2_chr6_4110706_4140575	0/0	t0004	184	2	0	0	2	0	0	copy fasta	ECI2	chr6	4110706	4140575
ECI2_chr6_4110706_4140575	0/0	t0005	184	1	1	0	0	0	0	copy fasta	ECI2	chr6	4110706	4140575
ECM1_chr1_150503109_150518789	1/1	t0001	424	391	67	76	182	16	48	copy fasta	ECM1	chr1	150503109	150518789
ECM1_chr1_150503109_150518789	0/0	t0002	424	16	15	1	0	0	0	copy fasta	ECM1	chr1	150503109	150518789
ECM1_chr1_150503109_150518789	0/0	t0003	424	12	12	0	0	0	0	copy fasta	ECM1	chr1	150503109	150518789