Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ABCC11_chr16_48160773_48252539	0/0	t0010	2203	2	2	0	0	0	0	copy fasta	ABCC11	chr16	48160773	48252539
ABCC11_chr16_48160773_48252539	0/0	t0011	2203	2	2	0	0	0	0	copy fasta	ABCC11	chr16	48160773	48252539
ABCC11_chr16_48160773_48252539	0/0	t0012	2203	2	2	0	0	0	0	copy fasta	ABCC11	chr16	48160773	48252539
ABCC11_chr16_48160773_48252539	1/0	t0013	1746	2	0	1	0	0	0	copy fasta	ABCC11	chr16	48160773	48252539
ABCC11_chr16_48160773_48252539	0/0	t0014	2203	1	1	0	0	0	0	copy fasta	ABCC11	chr16	48160773	48252539
ABCC11_chr16_48160773_48252539	0/0	t0015	2203	1	1	0	0	0	0	copy fasta	ABCC11	chr16	48160773	48252539
ABCC11_chr16_48160773_48252539	0/0	t0016	2203	1	0	1	0	0	0	copy fasta	ABCC11	chr16	48160773	48252539
ABCC11_chr16_48160773_48252539	0/0	t0017	2203	1	1	0	0	0	0	copy fasta	ABCC11	chr16	48160773	48252539
ABCC11_chr16_48160773_48252539	0/0	t0018	2203	1	1	0	0	0	0	copy fasta	ABCC11	chr16	48160773	48252539
ABCC12_chr16_48075882_48160993	1/1	t0001	3306	85	46	12	12	2	11	copy fasta	ABCC12	chr16	48075882	48160993
ABCC12_chr16_48075882_48160993	0/0	t0002	3306	8	7	1	0	0	0	copy fasta	ABCC12	chr16	48075882	48160993
ABCC12_chr16_48075882_48160993	0/0	t0003	3306	8	8	0	0	0	0	copy fasta	ABCC12	chr16	48075882	48160993
ABCC12_chr16_48075882_48160993	0/0	t0004	3306	7	4	0	3	0	0	copy fasta	ABCC12	chr16	48075882	48160993
ABCC12_chr16_48075882_48160993	0/0	t0005	3306	4	4	0	0	0	0	copy fasta	ABCC12	chr16	48075882	48160993
ABCC12_chr16_48075882_48160993	0/0	t0006	3306	3	3	0	0	0	0	copy fasta	ABCC12	chr16	48075882	48160993
ABCC12_chr16_48075882_48160993	0/0	t0007	3306	2	2	0	0	0	0	copy fasta	ABCC12	chr16	48075882	48160993
ABCC12_chr16_48075882_48160993	0/0	t0008	3306	2	2	0	0	0	0	copy fasta	ABCC12	chr16	48075882	48160993
ABCC12_chr16_48075882_48160993	0/0	t0009	3306	2	2	0	0	0	0	copy fasta	ABCC12	chr16	48075882	48160993
ABCC12_chr16_48075882_48160993	0/0	t0010	3306	2	2	0	0	0	0	copy fasta	ABCC12	chr16	48075882	48160993
ABCC12_chr16_48075882_48160993	0/0	t0011	3306	2	2	0	0	0	0	copy fasta	ABCC12	chr16	48075882	48160993
ABCC12_chr16_48075882_48160993	0/0	t0012	3306	1	1	0	0	0	0	copy fasta	ABCC12	chr16	48075882	48160993
ABCC12_chr16_48075882_48160993	0/0	t0013	3306	1	0	0	0	0	1	copy fasta	ABCC12	chr16	48075882	48160993
ABCC12_chr16_48075882_48160993	0/0	t0014	3306	1	1	0	0	0	0	copy fasta	ABCC12	chr16	48075882	48160993
ABCC12_chr16_48075882_48160993	0/0	t0015	3306	1	1	0	0	0	0	copy fasta	ABCC12	chr16	48075882	48160993
ABCC12_chr16_48075882_48160993	0/0	t0016	3306	1	1	0	0	0	0	copy fasta	ABCC12	chr16	48075882	48160993
ABCC12_chr16_48075882_48160993	0/0	t0017	3306	1	0	1	0	0	0	copy fasta	ABCC12	chr16	48075882	48160993
ABCC12_chr16_48075882_48160993	0/0	t0018	3306	1	1	0	0	0	0	copy fasta	ABCC12	chr16	48075882	48160993
ABCC12_chr16_48075882_48160993	0/0	t0019	3306	1	0	0	1	0	0	copy fasta	ABCC12	chr16	48075882	48160993
ABCC12_chr16_48075882_48160993	0/0	t0020	3306	1	1	0	0	0	0	copy fasta	ABCC12	chr16	48075882	48160993
ABCC1_chr16_15944616_16148053	0/0	t0001	1910	60	9	6	25	1	19	copy fasta	ABCC1	chr16	15944616	16148053
ABCC1_chr16_15944616_16148053	0/0	t0002	1910	38	5	12	11	7	3	copy fasta	ABCC1	chr16	15944616	16148053
ABCC1_chr16_15944616_16148053	0/0	t0003	1910	29	2	5	21	0	1	copy fasta	ABCC1	chr16	15944616	16148053
ABCC1_chr16_15944616_16148053	0/0	t0004	1909	19	5	6	7	1	0	copy fasta	ABCC1	chr16	15944616	16148053
ABCC1_chr16_15944616_16148053	0/0	t0005	1909	18	18	0	0	0	0	copy fasta	ABCC1	chr16	15944616	16148053
ABCC1_chr16_15944616_16148053	0/0	t0006	1910	14	13	1	0	0	0	copy fasta	ABCC1	chr16	15944616	16148053
ABCC1_chr16_15944616_16148053	0/1	t0007	1909	13	0	1	5	1	5	copy fasta	ABCC1	chr16	15944616	16148053
ABCC1_chr16_15944616_16148053	0/0	t0008	1910	12	5	1	4	0	2	copy fasta	ABCC1	chr16	15944616	16148053
ABCC1_chr16_15944616_16148053	0/0	t0009	1909	7	6	1	0	0	0	copy fasta	ABCC1	chr16	15944616	16148053
ABCC1_chr16_15944616_16148053	0/0	t0010	1910	6	6	0	0	0	0	copy fasta	ABCC1	chr16	15944616	16148053
ABCC1_chr16_15944616_16148053	0/0	t0011	1910	4	3	1	0	0	0	copy fasta	ABCC1	chr16	15944616	16148053
ABCC1_chr16_15944616_16148053	0/0	t0012	1910	4	4	0	0	0	0	copy fasta	ABCC1	chr16	15944616	16148053
ABCC1_chr16_15944616_16148053	0/0	t0013	1905	4	0	2	0	2	0	copy fasta	ABCC1	chr16	15944616	16148053
ABCC1_chr16_15944616_16148053	0/0	t0014	1910	3	0	0	3	0	0	copy fasta	ABCC1	chr16	15944616	16148053
ABCC1_chr16_15944616_16148053	0/0	t0015	1909	2	1	1	0	0	0	copy fasta	ABCC1	chr16	15944616	16148053
ABCC1_chr16_15944616_16148053	0/0	t0016	1911	2	2	0	0	0	0	copy fasta	ABCC1	chr16	15944616	16148053
ABCC1_chr16_15944616_16148053	0/0	t0017	1910	2	2	0	0	0	0	copy fasta	ABCC1	chr16	15944616	16148053
ABCC1_chr16_15944616_16148053	0/0	t0018	1909	2	0	0	1	0	1	copy fasta	ABCC1	chr16	15944616	16148053
ABCC1_chr16_15944616_16148053	0/0	t0019	1911	1	1	0	0	0	0	copy fasta	ABCC1	chr16	15944616	16148053
ABCC1_chr16_15944616_16148053	0/0	t0020	1911	1	1	0	0	0	0	copy fasta	ABCC1	chr16	15944616	16148053
ABCC1_chr16_15944616_16148053	0/0	t0021	1899	1	1	0	0	0	0	copy fasta	ABCC1	chr16	15944616	16148053