JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ECM1_chr1_150503109_150518789	0/0	t0004	424	1	0	1	0	0	0	copy fasta	ECM1	chr1	150503109	150518789
ECM2_chr9_92490315_92540990	1/1	t0001	1086	251	28	54	128	10	29	copy fasta	ECM2	chr9	92490315	92540990
ECM2_chr9_92490315_92540990	0/0	t0002	1086	143	52	19	54	8	10	copy fasta	ECM2	chr9	92490315	92540990
ECM2_chr9_92490315_92540990	0/0	t0003	1086	2	2	0	0	0	0	copy fasta	ECM2	chr9	92490315	92540990
ECM2_chr9_92490315_92540990	0/0	t0004	1086	1	1	0	0	0	0	copy fasta	ECM2	chr9	92490315	92540990
ECM2_chr9_92490315_92540990	0/0	t0005	1086	1	1	0	0	0	0	copy fasta	ECM2	chr9	92490315	92540990
ECM2_chr9_92490315_92540990	0/0	t0006	1086	1	0	1	0	0	0	copy fasta	ECM2	chr9	92490315	92540990
ECM2_chr9_92490315_92540990	0/0	t0007	1086	1	0	0	0	0	1	copy fasta	ECM2	chr9	92490315	92540990
ECPAS_chr9_111355685_111489383	1/1	t0001	1696	318	80	57	130	14	35	copy fasta	ECPAS	chr9	111355685	111489383
ECPAS_chr9_111355685_111489383	0/0	t0002	1696	21	0	1	18	0	2	copy fasta	ECPAS	chr9	111355685	111489383
ECPAS_chr9_111355685_111489383	0/0	t0003	1696	7	0	0	7	0	0	copy fasta	ECPAS	chr9	111355685	111489383
ECPAS_chr9_111355685_111489383	0/0	t0004	1696	2	2	0	0	0	0	copy fasta	ECPAS	chr9	111355685	111489383
ECPAS_chr9_111355685_111489383	0/0	t0005	1696	1	0	1	0	0	0	copy fasta	ECPAS	chr9	111355685	111489383
ECPAS_chr9_111355685_111489383	0/0	t0006	1696	1	0	1	0	0	0	copy fasta	ECPAS	chr9	111355685	111489383
ECPAS_chr9_111355685_111489383	0/0	t0007	1696	1	0	0	1	0	0	copy fasta	ECPAS	chr9	111355685	111489383
ECPAS_chr9_111355685_111489383	0/0	t0008	1696	1	0	0	0	0	1	copy fasta	ECPAS	chr9	111355685	111489383
ECPAS_chr9_111355685_111489383	0/0	t0009	1696	1	0	0	1	0	0	copy fasta	ECPAS	chr9	111355685	111489383
ECPAS_chr9_111355685_111489383	0/0	t0010	1696	1	0	0	1	0	0	copy fasta	ECPAS	chr9	111355685	111489383
ECRG4_chr2_106060688_106083155	1/1	t0001	307	423	85	78	197	16	45	copy fasta	ECRG4	chr2	106060688	106083155
ECRG4_chr2_106060688_106083155	0/0	t0002	307	4	4	0	0	0	0	copy fasta	ECRG4	chr2	106060688	106083155
ECRG4_chr2_106060688_106083155	0/0	t0003	307	4	4	0	0	0	0	copy fasta	ECRG4	chr2	106060688	106083155
ECRG4_chr2_106060688_106083155	0/0	t0004	307	1	1	0	0	0	0	copy fasta	ECRG4	chr2	106060688	106083155
ECRG4_chr2_106060688_106083155	0/0	t0005	307	1	0	0	0	0	1	copy fasta	ECRG4	chr2	106060688	106083155
ECRG4_chr2_106060688_106083155	0/0	t0006	307	1	0	0	1	0	0	copy fasta	ECRG4	chr2	106060688	106083155
ECSCR_chr5_139443560_139467743	0/1	t0001	414	368	84	70	164	16	33	copy fasta	ECSCR	chr5	139443560	139467743
ECSCR_chr5_139443560_139467743	0/0	t0002	414	1	0	0	0	0	1	copy fasta	ECSCR	chr5	139443560	139467743
ECSIT_chr19_11500929_11534134	1/1	t0001	352	250	51	48	104	10	35	copy fasta	ECSIT	chr19	11500929	11534134
ECSIT_chr19_11500929_11534134	0/0	t0002	352	60	44	13	2	0	1	copy fasta	ECSIT	chr19	11500929	11534134
ECSIT_chr19_11500929_11534134	0/0	t0003	352	1	0	1	0	0	0	copy fasta	ECSIT	chr19	11500929	11534134
ECSIT_chr19_11500929_11534134	0/0	t0004	352	1	1	0	0	0	0	copy fasta	ECSIT	chr19	11500929	11534134
ECT2L_chr6_138791087_138909070	0/0	t0001	1793	85	12	12	46	2	13	copy fasta	ECT2L	chr6	138791087	138909070
ECT2L_chr6_138791087_138909070	0/0	t0002	1793	63	14	14	27	3	5	copy fasta	ECT2L	chr6	138791087	138909070
ECT2L_chr6_138791087_138909070	0/1	t0003	1793	45	8	8	22	3	3	copy fasta	ECT2L	chr6	138791087	138909070
ECT2L_chr6_138791087_138909070	0/0	t0004	1793	30	5	2	21	2	0	copy fasta	ECT2L	chr6	138791087	138909070
ECT2L_chr6_138791087_138909070	0/0	t0005	1793	21	6	8	5	0	2	copy fasta	ECT2L	chr6	138791087	138909070
ECT2L_chr6_138791087_138909070	1/0	t0006	1793	19	0	4	8	1	5	copy fasta	ECT2L	chr6	138791087	138909070
ECT2L_chr6_138791087_138909070	0/0	t0007	1793	9	6	1	1	0	1	copy fasta	ECT2L	chr6	138791087	138909070
ECT2L_chr6_138791087_138909070	0/0	t0008	1793	9	5	0	4	0	0	copy fasta	ECT2L	chr6	138791087	138909070
ECT2L_chr6_138791087_138909070	0/0	t0009	1793	9	8	1	0	0	0	copy fasta	ECT2L	chr6	138791087	138909070
ECT2L_chr6_138791087_138909070	0/0	t0010	1793	4	3	1	0	0	0	copy fasta	ECT2L	chr6	138791087	138909070
ECT2L_chr6_138791087_138909070	0/0	t0011	1792	3	3	0	0	0	0	copy fasta	ECT2L	chr6	138791087	138909070
ECT2L_chr6_138791087_138909070	0/0	t0012	1793	3	3	0	0	0	0	copy fasta	ECT2L	chr6	138791087	138909070
ECT2L_chr6_138791087_138909070	0/0	t0013	1793	3	3	0	0	0	0	copy fasta	ECT2L	chr6	138791087	138909070
ECT2L_chr6_138791087_138909070	0/0	t0014	1793	2	2	0	0	0	0	copy fasta	ECT2L	chr6	138791087	138909070
ECT2L_chr6_138791087_138909070	0/0	t0015	1793	2	2	0	0	0	0	copy fasta	ECT2L	chr6	138791087	138909070
ECT2L_chr6_138791087_138909070	0/0	t0016	1793	2	2	0	0	0	0	copy fasta	ECT2L	chr6	138791087	138909070
ECT2L_chr6_138791087_138909070	0/0	t0017	1793	2	2	0	0	0	0	copy fasta	ECT2L	chr6	138791087	138909070
ECT2L_chr6_138791087_138909070	0/0	t0018	1793	2	2	0	0	0	0	copy fasta	ECT2L	chr6	138791087	138909070
ECT2L_chr6_138791087_138909070	0/0	t0019	1793	2	0	1	1	0	0	copy fasta	ECT2L	chr6	138791087	138909070
ECT2L_chr6_138791087_138909070	0/0	t0020	1792	2	1	1	0	0	0	copy fasta	ECT2L	chr6	138791087	138909070