JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ECT2L_chr6_138791087_138909070	0/0	t0021	1793	1	1	0	0	0	0	copy fasta	ECT2L	chr6	138791087	138909070
ECT2L_chr6_138791087_138909070	0/0	t0022	1793	1	0	0	0	1	0	copy fasta	ECT2L	chr6	138791087	138909070
ECT2L_chr6_138791087_138909070	0/0	t0023	1793	1	0	1	0	0	0	copy fasta	ECT2L	chr6	138791087	138909070
ECT2L_chr6_138791087_138909070	0/0	t0024	1793	1	0	1	0	0	0	copy fasta	ECT2L	chr6	138791087	138909070
ECT2L_chr6_138791087_138909070	0/0	t0025	1792	1	1	0	0	0	0	copy fasta	ECT2L	chr6	138791087	138909070
ECT2L_chr6_138791087_138909070	0/0	t0026	1793	1	0	0	0	0	1	copy fasta	ECT2L	chr6	138791087	138909070
ECT2L_chr6_138791087_138909070	0/0	t0027	1793	1	0	0	1	0	0	copy fasta	ECT2L	chr6	138791087	138909070
ECT2L_chr6_138791087_138909070	0/0	t0028	1793	1	0	1	0	0	0	copy fasta	ECT2L	chr6	138791087	138909070
ECT2L_chr6_138791087_138909070	0/0	t0029	1793	1	1	0	0	0	0	copy fasta	ECT2L	chr6	138791087	138909070
ECT2_chr3_172745726_172826474	1/1	t0001	1392	123	40	20	38	8	15	copy fasta	ECT2	chr3	172745726	172826474
ECT2_chr3_172745726_172826474	0/0	t0002	1392	100	5	18	59	6	12	copy fasta	ECT2	chr3	172745726	172826474
ECT2_chr3_172745726_172826474	0/0	t0003	1392	46	8	0	33	1	4	copy fasta	ECT2	chr3	172745726	172826474
ECT2_chr3_172745726_172826474	0/0	t0004	1392	24	23	1	0	0	0	copy fasta	ECT2	chr3	172745726	172826474
ECT2_chr3_172745726_172826474	0/0	t0005	1392	5	0	3	0	0	2	copy fasta	ECT2	chr3	172745726	172826474
ECT2_chr3_172745726_172826474	0/0	t0006	1392	5	0	2	1	1	1	copy fasta	ECT2	chr3	172745726	172826474
ECT2_chr3_172745726_172826474	0/0	t0007	1392	5	1	1	0	0	3	copy fasta	ECT2	chr3	172745726	172826474
ECT2_chr3_172745726_172826474	0/0	t0008	1392	4	4	0	0	0	0	copy fasta	ECT2	chr3	172745726	172826474
ECT2_chr3_172745726_172826474	0/0	t0009	1392	1	0	0	0	0	1	copy fasta	ECT2	chr3	172745726	172826474
ECT2_chr3_172745726_172826474	0/0	t0010	1392	1	0	1	0	0	0	copy fasta	ECT2	chr3	172745726	172826474
ECT2_chr3_172745726_172826474	0/0	t0011	1392	1	1	0	0	0	0	copy fasta	ECT2	chr3	172745726	172826474
ECT2_chr3_172745726_172826474	0/0	t0012	1392	1	0	0	1	0	0	copy fasta	ECT2	chr3	172745726	172826474
ECT2_chr3_172745726_172826474	0/0	t0013	1392	1	0	0	1	0	0	copy fasta	ECT2	chr3	172745726	172826474
ECT2_chr3_172745726_172826474	0/0	t0014	1392	1	0	0	1	0	0	copy fasta	ECT2	chr3	172745726	172826474
EDA2R_chrX_66590637_66644078	0/1	t0001	2562	132	7	24	82	3	15	copy fasta	EDA2R	chrX	66590637	66644078
EDA2R_chrX_66590637_66644078	1/0	t0002	2562	47	34	6	0	2	4	copy fasta	EDA2R	chrX	66590637	66644078
EDA2R_chrX_66590637_66644078	0/0	t0003	2564	17	16	1	0	0	0	copy fasta	EDA2R	chrX	66590637	66644078
EDA2R_chrX_66590637_66644078	0/0	t0004	2562	9	0	4	2	0	3	copy fasta	EDA2R	chrX	66590637	66644078
EDA2R_chrX_66590637_66644078	0/0	t0005	2565	3	3	0	0	0	0	copy fasta	EDA2R	chrX	66590637	66644078
EDA2R_chrX_66590637_66644078	0/0	t0006	2563	3	1	2	0	0	0	copy fasta	EDA2R	chrX	66590637	66644078
EDA2R_chrX_66590637_66644078	0/0	t0007	2562	2	0	1	0	1	0	copy fasta	EDA2R	chrX	66590637	66644078
EDA2R_chrX_66590637_66644078	0/0	t0008	2564	2	2	0	0	0	0	copy fasta	EDA2R	chrX	66590637	66644078
EDA2R_chrX_66590637_66644078	0/0	t0009	2564	1	1	0	0	0	0	copy fasta	EDA2R	chrX	66590637	66644078
EDA2R_chrX_66590637_66644078	0/0	t0010	2564	1	0	0	1	0	0	copy fasta	EDA2R	chrX	66590637	66644078
EDA2R_chrX_66590637_66644078	0/0	t0011	2562	1	0	0	1	0	0	copy fasta	EDA2R	chrX	66590637	66644078
EDA2R_chrX_66590637_66644078	0/0	t0012	2562	1	0	0	0	1	0	copy fasta	EDA2R	chrX	66590637	66644078
EDA2R_chrX_66590637_66644078	0/0	t0013	2562	1	0	0	1	0	0	copy fasta	EDA2R	chrX	66590637	66644078
EDA2R_chrX_66590637_66644078	0/0	t0014	2562	1	0	0	1	0	0	copy fasta	EDA2R	chrX	66590637	66644078
EDA2R_chrX_66590637_66644078	0/0	t0015	2561	1	0	0	1	0	0	copy fasta	EDA2R	chrX	66590637	66644078
EDARADD_chr1_236389286_236489930	1/1	t0001	2441	118	21	20	58	4	13	copy fasta	EDARADD	chr1	236389286	236489930
EDARADD_chr1_236389286_236489930	0/0	t0002	2442	44	14	6	20	0	4	copy fasta	EDARADD	chr1	236389286	236489930
EDARADD_chr1_236389286_236489930	0/0	t0003	2440	27	0	12	3	3	9	copy fasta	EDARADD	chr1	236389286	236489930
EDARADD_chr1_236389286_236489930	0/0	t0004	2441	26	5	5	14	0	2	copy fasta	EDARADD	chr1	236389286	236489930
EDARADD_chr1_236389286_236489930	0/0	t0005	2440	26	4	6	10	1	5	copy fasta	EDARADD	chr1	236389286	236489930
EDARADD_chr1_236389286_236489930	0/0	t0006	2441	7	6	1	0	0	0	copy fasta	EDARADD	chr1	236389286	236489930
EDARADD_chr1_236389286_236489930	0/0	t0007	2440	5	5	0	0	0	0	copy fasta	EDARADD	chr1	236389286	236489930
EDARADD_chr1_236389286_236489930	0/0	t0008	2441	5	5	0	0	0	0	copy fasta	EDARADD	chr1	236389286	236489930
EDARADD_chr1_236389286_236489930	0/0	t0009	2441	4	0	0	4	0	0	copy fasta	EDARADD	chr1	236389286	236489930
EDARADD_chr1_236389286_236489930	0/0	t0010	2442	4	0	0	0	0	4	copy fasta	EDARADD	chr1	236389286	236489930
EDARADD_chr1_236389286_236489930	0/0	t0011	2442	3	1	2	0	0	0	copy fasta	EDARADD	chr1	236389286	236489930
EDARADD_chr1_236389286_236489930	0/0	t0012	2441	3	2	1	0	0	0	copy fasta	EDARADD	chr1	236389286	236489930