JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
EDARADD_chr1_236389286_236489930	0/0	t0013	2441	3	0	0	0	0	3	copy fasta	EDARADD	chr1	236389286	236489930
EDARADD_chr1_236389286_236489930	0/0	t0014	2441	2	1	1	0	0	0	copy fasta	EDARADD	chr1	236389286	236489930
EDARADD_chr1_236389286_236489930	0/0	t0015	2440	2	0	0	0	0	2	copy fasta	EDARADD	chr1	236389286	236489930
EDARADD_chr1_236389286_236489930	0/0	t0016	2440	2	2	0	0	0	0	copy fasta	EDARADD	chr1	236389286	236489930
EDARADD_chr1_236389286_236489930	0/0	t0017	2441	1	1	0	0	0	0	copy fasta	EDARADD	chr1	236389286	236489930
EDARADD_chr1_236389286_236489930	0/0	t0018	2440	1	1	0	0	0	0	copy fasta	EDARADD	chr1	236389286	236489930
EDARADD_chr1_236389286_236489930	0/0	t0019	2441	1	1	0	0	0	0	copy fasta	EDARADD	chr1	236389286	236489930
EDARADD_chr1_236389286_236489930	0/0	t0020	2440	1	1	0	0	0	0	copy fasta	EDARADD	chr1	236389286	236489930
EDARADD_chr1_236389286_236489930	0/0	t0021	2441	1	0	1	0	0	0	copy fasta	EDARADD	chr1	236389286	236489930
EDARADD_chr1_236389286_236489930	0/0	t0022	2441	1	0	0	1	0	0	copy fasta	EDARADD	chr1	236389286	236489930
EDARADD_chr1_236389286_236489930	0/0	t0023	2440	1	0	1	0	0	0	copy fasta	EDARADD	chr1	236389286	236489930
EDARADD_chr1_236389286_236489930	0/0	t0024	2441	1	1	0	0	0	0	copy fasta	EDARADD	chr1	236389286	236489930
EDARADD_chr1_236389286_236489930	0/0	t0025	2440	1	1	0	0	0	0	copy fasta	EDARADD	chr1	236389286	236489930
EDARADD_chr1_236389286_236489930	0/0	t0026	2442	1	1	0	0	0	0	copy fasta	EDARADD	chr1	236389286	236489930
EDARADD_chr1_236389286_236489930	0/0	t0027	2442	1	0	0	1	0	0	copy fasta	EDARADD	chr1	236389286	236489930
EDARADD_chr1_236389286_236489930	0/0	t0028	2442	1	1	0	0	0	0	copy fasta	EDARADD	chr1	236389286	236489930
EDARADD_chr1_236389286_236489930	0/0	t0029	2441	1	0	0	1	0	0	copy fasta	EDARADD	chr1	236389286	236489930
EDAR_chr2_108889471_108994220	0/1	t0001	2716	77	4	27	22	7	16	copy fasta	EDAR	chr2	108889471	108994220
EDAR_chr2_108889471_108994220	0/0	t0002	2716	49	25	11	6	3	4	copy fasta	EDAR	chr2	108889471	108994220
EDAR_chr2_108889471_108994220	1/0	t0003	2716	25	14	5	1	0	4	copy fasta	EDAR	chr2	108889471	108994220
EDAR_chr2_108889471_108994220	0/0	t0004	2716	20	4	2	9	1	4	copy fasta	EDAR	chr2	108889471	108994220
EDAR_chr2_108889471_108994220	0/0	t0005	2720	7	7	0	0	0	0	copy fasta	EDAR	chr2	108889471	108994220
EDAR_chr2_108889471_108994220	0/0	t0006	2716	7	7	0	0	0	0	copy fasta	EDAR	chr2	108889471	108994220
EDAR_chr2_108889471_108994220	0/0	t0007	2716	6	0	3	0	1	2	copy fasta	EDAR	chr2	108889471	108994220
EDAR_chr2_108889471_108994220	0/0	t0008	2716	6	1	0	3	0	2	copy fasta	EDAR	chr2	108889471	108994220
EDAR_chr2_108889471_108994220	0/0	t0009	2720	6	4	2	0	0	0	copy fasta	EDAR	chr2	108889471	108994220
EDAR_chr2_108889471_108994220	0/0	t0010	2724	5	0	1	4	0	0	copy fasta	EDAR	chr2	108889471	108994220
EDAR_chr2_108889471_108994220	0/0	t0011	2720	5	4	1	0	0	0	copy fasta	EDAR	chr2	108889471	108994220
EDAR_chr2_108889471_108994220	0/0	t0012	2716	4	4	0	0	0	0	copy fasta	EDAR	chr2	108889471	108994220
EDAR_chr2_108889471_108994220	0/0	t0013	2716	2	2	0	0	0	0	copy fasta	EDAR	chr2	108889471	108994220
EDAR_chr2_108889471_108994220	0/0	t0014	2716	1	1	0	0	0	0	copy fasta	EDAR	chr2	108889471	108994220
EDAR_chr2_108889471_108994220	0/0	t0015	2716	1	1	0	0	0	0	copy fasta	EDAR	chr2	108889471	108994220
EDAR_chr2_108889471_108994220	0/0	t0016	2716	1	1	0	0	0	0	copy fasta	EDAR	chr2	108889471	108994220
EDAR_chr2_108889471_108994220	0/0	t0017	2716	1	0	1	0	0	0	copy fasta	EDAR	chr2	108889471	108994220
EDAR_chr2_108889471_108994220	0/0	t0018	2724	1	0	0	1	0	0	copy fasta	EDAR	chr2	108889471	108994220
EDAR_chr2_108889471_108994220	0/0	t0019	2716	1	0	1	0	0	0	copy fasta	EDAR	chr2	108889471	108994220
EDAR_chr2_108889471_108994220	0/0	t0020	2720	1	1	0	0	0	0	copy fasta	EDAR	chr2	108889471	108994220
EDA_chrX_69611113_70044472	0/0	t0001	4060	109	29	21	37	8	14	copy fasta	EDA	chrX	69611113	70044472
EDA_chrX_69611113_70044472	0/0	t0002	4060	45	5	15	17	0	8	copy fasta	EDA	chrX	69611113	70044472
EDA_chrX_69611113_70044472	0/0	t0003	4060	35	4	9	16	1	5	copy fasta	EDA	chrX	69611113	70044472
EDA_chrX_69611113_70044472	0/0	t0004	4060	11	9	2	0	0	0	copy fasta	EDA	chrX	69611113	70044472
EDA_chrX_69611113_70044472	0/0	t0005	4060	4	1	1	0	0	2	copy fasta	EDA	chrX	69611113	70044472
EDA_chrX_69611113_70044472	0/0	t0006	4060	2	2	0	0	0	0	copy fasta	EDA	chrX	69611113	70044472
EDA_chrX_69611113_70044472	0/0	t0007	4060	2	1	1	0	0	0	copy fasta	EDA	chrX	69611113	70044472
EDA_chrX_69611113_70044472	0/0	t0008	4060	2	2	0	0	0	0	copy fasta	EDA	chrX	69611113	70044472
EDA_chrX_69611113_70044472	0/0	t0009	4060	2	0	0	0	2	0	copy fasta	EDA	chrX	69611113	70044472
EDA_chrX_69611113_70044472	0/0	t0010	4060	2	2	0	0	0	0	copy fasta	EDA	chrX	69611113	70044472
EDA_chrX_69611113_70044472	0/0	t0011	4060	1	1	0	0	0	0	copy fasta	EDA	chrX	69611113	70044472
EDA_chrX_69611113_70044472	0/0	t0012	4060	1	1	0	0	0	0	copy fasta	EDA	chrX	69611113	70044472
EDA_chrX_69611113_70044472	0/0	t0013	4060	1	1	0	0	0	0	copy fasta	EDA	chrX	69611113	70044472