JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
EDA_chrX_69611113_70044472	0/0	t0014	4060	1	1	0	0	0	0	copy fasta	EDA	chrX	69611113	70044472
EDA_chrX_69611113_70044472	0/0	t0015	4060	1	0	0	0	0	1	copy fasta	EDA	chrX	69611113	70044472
EDA_chrX_69611113_70044472	0/0	t0016	4060	1	0	1	0	0	0	copy fasta	EDA	chrX	69611113	70044472
EDA_chrX_69611113_70044472	0/0	t0017	4060	1	0	1	0	0	0	copy fasta	EDA	chrX	69611113	70044472
EDA_chrX_69611113_70044472	0/0	t0018	4060	1	0	1	0	0	0	copy fasta	EDA	chrX	69611113	70044472
EDA_chrX_69611113_70044472	0/0	t0019	4060	1	0	0	1	0	0	copy fasta	EDA	chrX	69611113	70044472
EDA_chrX_69611113_70044472	0/0	t0020	4060	1	1	0	0	0	0	copy fasta	EDA	chrX	69611113	70044472
EDA_chrX_69611113_70044472	0/0	t0021	4060	1	0	0	1	0	0	copy fasta	EDA	chrX	69611113	70044472
EDA_chrX_69611113_70044472	0/0	t0022	4060	1	0	0	1	0	0	copy fasta	EDA	chrX	69611113	70044472
EDC3_chr15_74625558_74701024	1/1	t0001	2218	180	51	27	80	8	12	copy fasta	EDC3	chr15	74625558	74701024
EDC3_chr15_74625558_74701024	0/0	t0002	2218	86	2	13	59	4	8	copy fasta	EDC3	chr15	74625558	74701024
EDC3_chr15_74625558_74701024	0/0	t0003	2218	12	10	2	0	0	0	copy fasta	EDC3	chr15	74625558	74701024
EDC3_chr15_74625558_74701024	0/0	t0004	2218	6	6	0	0	0	0	copy fasta	EDC3	chr15	74625558	74701024
EDC3_chr15_74625558_74701024	0/0	t0005	2218	1	1	0	0	0	0	copy fasta	EDC3	chr15	74625558	74701024
EDC3_chr15_74625558_74701024	0/0	t0006	2218	1	0	0	1	0	0	copy fasta	EDC3	chr15	74625558	74701024
EDC4_chr16_67868052_67889499	1/1	t0001	562	232	82	47	61	10	30	copy fasta	EDC4	chr16	67868052	67889499
EDC4_chr16_67868052_67889499	0/0	t0002	572	6	6	0	0	0	0	copy fasta	EDC4	chr16	67868052	67889499
EDC4_chr16_67868052_67889499	0/0	t0003	562	1	0	0	1	0	0	copy fasta	EDC4	chr16	67868052	67889499
EDC4_chr16_67868052_67889499	0/0	t0004	562	1	0	1	0	0	0	copy fasta	EDC4	chr16	67868052	67889499
EDDM13_chr19_56267748_56315454	1/0	t0001	394	251	73	34	121	5	17	copy fasta	EDDM13	chr19	56267748	56315454
EDDM13_chr19_56267748_56315454	0/0	t0002	394	111	9	36	36	7	23	copy fasta	EDDM13	chr19	56267748	56315454
EDDM13_chr19_56267748_56315454	0/1	t0003	394	23	6	4	8	2	2	copy fasta	EDDM13	chr19	56267748	56315454
EDDM13_chr19_56267748_56315454	0/0	t0004	394	5	4	1	0	0	0	copy fasta	EDDM13	chr19	56267748	56315454
EDDM13_chr19_56267748_56315454	0/0	t0005	394	3	0	1	0	0	2	copy fasta	EDDM13	chr19	56267748	56315454
EDDM13_chr19_56267748_56315454	0/0	t0006	394	2	2	0	0	0	0	copy fasta	EDDM13	chr19	56267748	56315454
EDDM13_chr19_56267748_56315454	0/0	t0007	394	1	0	0	1	0	0	copy fasta	EDDM13	chr19	56267748	56315454
EDDM3A_chr14_20740887_20753380	0/1	t0001	489	354	48	71	181	12	41	copy fasta	EDDM3A	chr14	20740887	20753380
EDDM3A_chr14_20740887_20753380	1/0	t0002	489	34	15	8	0	6	4	copy fasta	EDDM3A	chr14	20740887	20753380
EDDM3A_chr14_20740887_20753380	0/0	t0003	489	22	0	0	22	0	0	copy fasta	EDDM3A	chr14	20740887	20753380
EDDM3A_chr14_20740887_20753380	0/0	t0004	489	16	16	0	0	0	0	copy fasta	EDDM3A	chr14	20740887	20753380
EDDM3A_chr14_20740887_20753380	0/0	t0005	489	14	13	1	0	0	0	copy fasta	EDDM3A	chr14	20740887	20753380
EDDM3A_chr14_20740887_20753380	0/0	t0006	489	2	2	0	0	0	0	copy fasta	EDDM3A	chr14	20740887	20753380
EDDM3A_chr14_20740887_20753380	0/0	t0007	489	1	0	0	0	0	1	copy fasta	EDDM3A	chr14	20740887	20753380
EDDM3A_chr14_20740887_20753380	0/0	t0008	489	1	0	0	1	0	0	copy fasta	EDDM3A	chr14	20740887	20753380
EDDM3A_chr14_20740887_20753380	0/0	t0009	489	1	0	0	1	0	0	copy fasta	EDDM3A	chr14	20740887	20753380
EDDM3A_chr14_20740887_20753380	0/0	t0010	489	1	0	0	1	0	0	copy fasta	EDDM3A	chr14	20740887	20753380
EDDM3B_chr14_20763404_20775948	1/0	t0001	476	256	55	45	122	9	24	copy fasta	EDDM3B	chr14	20763404	20775948
EDDM3B_chr14_20763404_20775948	0/0	t0002	476	101	11	18	48	6	18	copy fasta	EDDM3B	chr14	20763404	20775948
EDDM3B_chr14_20763404_20775948	0/1	t0003	476	77	25	16	34	0	1	copy fasta	EDDM3B	chr14	20763404	20775948
EDDM3B_chr14_20763404_20775948	0/0	t0004	476	25	0	0	23	1	1	copy fasta	EDDM3B	chr14	20763404	20775948
EDDM3B_chr14_20763404_20775948	0/0	t0005	476	13	5	3	0	2	3	copy fasta	EDDM3B	chr14	20763404	20775948
EDDM3B_chr14_20763404_20775948	0/0	t0006	476	5	4	1	0	0	0	copy fasta	EDDM3B	chr14	20763404	20775948
EDDM3B_chr14_20763404_20775948	0/0	t0007	476	1	0	0	1	0	0	copy fasta	EDDM3B	chr14	20763404	20775948
EDDM3B_chr14_20763404_20775948	0/0	t0008	476	1	0	1	0	0	0	copy fasta	EDDM3B	chr14	20763404	20775948
EDDM3B_chr14_20763404_20775948	0/0	t0009	476	1	0	0	0	0	1	copy fasta	EDDM3B	chr14	20763404	20775948
EDEM1_chr3_5182707_5224958	0/0	t0001	4140	84	7	25	43	2	7	copy fasta	EDEM1	chr3	5182707	5224958
EDEM1_chr3_5182707_5224958	0/0	t0002	4140	61	5	14	31	8	3	copy fasta	EDEM1	chr3	5182707	5224958
EDEM1_chr3_5182707_5224958	0/0	t0003	4140	39	0	6	30	0	3	copy fasta	EDEM1	chr3	5182707	5224958
EDEM1_chr3_5182707_5224958	0/0	t0004	4140	37	12	0	22	1	2	copy fasta	EDEM1	chr3	5182707	5224958
EDEM1_chr3_5182707_5224958	0/0	t0005	4138	18	4	1	11	0	2	copy fasta	EDEM1	chr3	5182707	5224958