JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
EDEM1_chr3_5182707_5224958	0/0	t0006	4140	14	7	1	4	0	2	copy fasta	EDEM1	chr3	5182707	5224958
EDEM1_chr3_5182707_5224958	0/0	t0007	4140	11	6	0	3	0	2	copy fasta	EDEM1	chr3	5182707	5224958
EDEM1_chr3_5182707_5224958	0/1	t0008	4140	9	5	3	0	0	0	copy fasta	EDEM1	chr3	5182707	5224958
EDEM1_chr3_5182707_5224958	0/0	t0009	4140	8	0	3	4	0	1	copy fasta	EDEM1	chr3	5182707	5224958
EDEM1_chr3_5182707_5224958	0/0	t0010	4140	6	0	6	0	0	0	copy fasta	EDEM1	chr3	5182707	5224958
EDEM1_chr3_5182707_5224958	0/0	t0011	4141	5	5	0	0	0	0	copy fasta	EDEM1	chr3	5182707	5224958
EDEM1_chr3_5182707_5224958	0/0	t0012	4138	5	5	0	0	0	0	copy fasta	EDEM1	chr3	5182707	5224958
EDEM1_chr3_5182707_5224958	0/0	t0013	4140	5	1	2	0	0	2	copy fasta	EDEM1	chr3	5182707	5224958
EDEM1_chr3_5182707_5224958	0/0	t0014	4139	4	4	0	0	0	0	copy fasta	EDEM1	chr3	5182707	5224958
EDEM1_chr3_5182707_5224958	0/0	t0015	4139	4	1	0	1	1	1	copy fasta	EDEM1	chr3	5182707	5224958
EDEM1_chr3_5182707_5224958	0/0	t0016	4138	4	1	0	0	0	3	copy fasta	EDEM1	chr3	5182707	5224958
EDEM1_chr3_5182707_5224958	0/0	t0017	4139	3	3	0	0	0	0	copy fasta	EDEM1	chr3	5182707	5224958
EDEM1_chr3_5182707_5224958	0/0	t0018	4140	3	3	0	0	0	0	copy fasta	EDEM1	chr3	5182707	5224958
EDEM1_chr3_5182707_5224958	0/0	t0019	4140	3	2	0	0	0	1	copy fasta	EDEM1	chr3	5182707	5224958
EDEM1_chr3_5182707_5224958	0/0	t0020	4138	3	1	0	1	0	1	copy fasta	EDEM1	chr3	5182707	5224958
EDEM1_chr3_5182707_5224958	0/0	t0021	4140	2	2	0	0	0	0	copy fasta	EDEM1	chr3	5182707	5224958
EDEM1_chr3_5182707_5224958	0/0	t0022	4141	2	0	0	0	0	2	copy fasta	EDEM1	chr3	5182707	5224958
EDEM1_chr3_5182707_5224958	0/0	t0023	4141	2	0	1	0	1	0	copy fasta	EDEM1	chr3	5182707	5224958
EDEM1_chr3_5182707_5224958	0/0	t0024	4140	2	2	0	0	0	0	copy fasta	EDEM1	chr3	5182707	5224958
EDEM1_chr3_5182707_5224958	0/0	t0025	4140	2	0	0	2	0	0	copy fasta	EDEM1	chr3	5182707	5224958
EDEM1_chr3_5182707_5224958	0/0	t0026	4140	2	0	0	2	0	0	copy fasta	EDEM1	chr3	5182707	5224958
EDEM1_chr3_5182707_5224958	0/0	t0027	4140	1	1	0	0	0	0	copy fasta	EDEM1	chr3	5182707	5224958
EDEM1_chr3_5182707_5224958	0/0	t0028	4140	1	0	0	0	0	1	copy fasta	EDEM1	chr3	5182707	5224958
EDEM1_chr3_5182707_5224958	0/0	t0029	4139	1	1	0	0	0	0	copy fasta	EDEM1	chr3	5182707	5224958
EDEM1_chr3_5182707_5224958	0/0	t0030	4138	1	1	0	0	0	0	copy fasta	EDEM1	chr3	5182707	5224958
EDEM1_chr3_5182707_5224958	0/0	t0031	4140	1	1	0	0	0	0	copy fasta	EDEM1	chr3	5182707	5224958
EDEM1_chr3_5182707_5224958	0/0	t0032	4140	1	0	0	0	0	1	copy fasta	EDEM1	chr3	5182707	5224958
EDEM1_chr3_5182707_5224958	0/0	t0033	4140	1	0	0	0	0	1	copy fasta	EDEM1	chr3	5182707	5224958
EDEM1_chr3_5182707_5224958	0/0	t0034	4140	1	0	0	0	0	1	copy fasta	EDEM1	chr3	5182707	5224958
EDEM1_chr3_5182707_5224958	0/0	t0035	4141	1	0	0	1	0	0	copy fasta	EDEM1	chr3	5182707	5224958
EDEM1_chr3_5182707_5224958	0/0	t0036	4140	1	1	0	0	0	0	copy fasta	EDEM1	chr3	5182707	5224958
EDEM1_chr3_5182707_5224958	0/0	t0037	4140	1	1	0	0	0	0	copy fasta	EDEM1	chr3	5182707	5224958
EDEM1_chr3_5182707_5224958	0/0	t0038	4139	1	0	1	0	0	0	copy fasta	EDEM1	chr3	5182707	5224958
EDEM1_chr3_5182707_5224958	0/0	t0039	4141	1	1	0	0	0	0	copy fasta	EDEM1	chr3	5182707	5224958
EDEM1_chr3_5182707_5224958	0/0	t0040	4140	1	1	0	0	0	0	copy fasta	EDEM1	chr3	5182707	5224958
EDEM1_chr3_5182707_5224958	0/0	t0041	4139	1	0	0	1	0	0	copy fasta	EDEM1	chr3	5182707	5224958
EDEM1_chr3_5182707_5224958	0/0	t0042	4139	1	0	0	0	1	0	copy fasta	EDEM1	chr3	5182707	5224958
EDEM1_chr3_5182707_5224958	0/0	t0043	4139	1	0	0	1	0	0	copy fasta	EDEM1	chr3	5182707	5224958
EDEM1_chr3_5182707_5224958	0/0	t0044	4140	1	1	0	0	0	0	copy fasta	EDEM1	chr3	5182707	5224958
EDEM1_chr3_5182707_5224958	0/0	t0045	4140	1	1	0	0	0	0	copy fasta	EDEM1	chr3	5182707	5224958
EDEM1_chr3_5182707_5224958	0/0	t0046	4140	1	0	0	0	0	1	copy fasta	EDEM1	chr3	5182707	5224958
EDEM1_chr3_5182707_5224958	0/0	t0047	4141	1	1	0	0	0	0	copy fasta	EDEM1	chr3	5182707	5224958
EDEM1_chr3_5182707_5224958	0/0	t0048	4138	1	0	1	0	0	0	copy fasta	EDEM1	chr3	5182707	5224958
EDEM1_chr3_5182707_5224958	0/0	t0049	4138	1	0	0	0	0	1	copy fasta	EDEM1	chr3	5182707	5224958
EDEM1_chr3_5182707_5224958	0/0	t0050	4138	1	0	0	0	0	1	copy fasta	EDEM1	chr3	5182707	5224958
EDEM1_chr3_5182707_5224958	0/0	t0051	4138	1	0	0	1	0	0	copy fasta	EDEM1	chr3	5182707	5224958
EDEM1_chr3_5182707_5224958	0/0	t0052	4138	1	1	0	0	0	0	copy fasta	EDEM1	chr3	5182707	5224958
EDEM1_chr3_5182707_5224958	0/0	t0053	4138	1	1	0	0	0	0	copy fasta	EDEM1	chr3	5182707	5224958
EDEM1_chr3_5182707_5224958	0/0	t0054	4138	1	1	0	0	0	0	copy fasta	EDEM1	chr3	5182707	5224958
EDEM1_chr3_5182707_5224958	1/0	t0055	4140	1	0	0	0	0	0	copy fasta	EDEM1	chr3	5182707	5224958